Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04840

Experiment: Beta-alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04830 and ABZR87_RS04835 are separated by 59 nucleotidesABZR87_RS04835 and ABZR87_RS04840 are separated by 75 nucleotidesABZR87_RS04840 and ABZR87_RS04845 are separated by 17 nucleotides ABZR87_RS04830: ABZR87_RS04830 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,013,726 to 1,014,637 _RS04830 ABZR87_RS04835: ABZR87_RS04835 - hypothetical protein, at 1,014,697 to 1,015,392 _RS04835 ABZR87_RS04840: ABZR87_RS04840 - alkaline phosphatase, at 1,015,468 to 1,016,862 _RS04840 ABZR87_RS04845: ABZR87_RS04845 - alkaline phosphatase, at 1,016,880 to 1,018,337 _RS04845 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -2 -1 0 1 2at 1014.651 kb on + strandat 1014.651 kb on + strandat 1014.651 kb on + strandat 1014.652 kb on - strandat 1014.652 kb on - strandat 1014.652 kb on - strandat 1014.668 kb on + strandat 1014.668 kb on + strandat 1014.668 kb on + strandat 1014.669 kb on - strandat 1014.669 kb on - strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.670 kb on + strandat 1014.671 kb on - strandat 1014.671 kb on - strandat 1014.671 kb on - strandat 1014.671 kb on - strandat 1014.716 kb on + strandat 1014.732 kb on - strandat 1014.897 kb on - strand, within ABZR87_RS04835at 1015.007 kb on + strand, within ABZR87_RS04835at 1015.007 kb on + strand, within ABZR87_RS04835at 1015.008 kb on - strand, within ABZR87_RS04835at 1015.339 kb on - strandat 1015.364 kb on + strandat 1015.392 kb on + strandat 1015.392 kb on + strandat 1015.392 kb on + strandat 1015.392 kb on + strandat 1015.392 kb on + strandat 1015.629 kb on - strand, within ABZR87_RS04840at 1015.629 kb on - strand, within ABZR87_RS04840at 1015.715 kb on + strand, within ABZR87_RS04840at 1015.715 kb on + strand, within ABZR87_RS04840at 1015.715 kb on + strand, within ABZR87_RS04840at 1015.715 kb on + strand, within ABZR87_RS04840at 1015.715 kb on + strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.716 kb on - strand, within ABZR87_RS04840at 1015.982 kb on + strand, within ABZR87_RS04840at 1016.078 kb on + strand, within ABZR87_RS04840at 1016.078 kb on + strand, within ABZR87_RS04840at 1016.078 kb on + strand, within ABZR87_RS04840at 1016.079 kb on - strand, within ABZR87_RS04840at 1016.079 kb on - strand, within ABZR87_RS04840at 1016.079 kb on - strand, within ABZR87_RS04840at 1016.079 kb on - strand, within ABZR87_RS04840at 1016.079 kb on - strand, within ABZR87_RS04840at 1016.165 kb on + strand, within ABZR87_RS04840at 1016.165 kb on + strand, within ABZR87_RS04840at 1016.165 kb on + strand, within ABZR87_RS04840at 1016.165 kb on + strand, within ABZR87_RS04840at 1016.165 kb on + strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.166 kb on - strand, within ABZR87_RS04840at 1016.247 kb on - strand, within ABZR87_RS04840at 1016.247 kb on - strand, within ABZR87_RS04840at 1016.303 kb on + strand, within ABZR87_RS04840at 1016.372 kb on + strand, within ABZR87_RS04840at 1016.373 kb on - strand, within ABZR87_RS04840at 1016.513 kb on + strand, within ABZR87_RS04840at 1016.513 kb on + strand, within ABZR87_RS04840at 1016.513 kb on + strand, within ABZR87_RS04840at 1016.513 kb on + strand, within ABZR87_RS04840at 1016.513 kb on + strand, within ABZR87_RS04840at 1016.514 kb on - strand, within ABZR87_RS04840at 1016.514 kb on - strand, within ABZR87_RS04840at 1016.514 kb on - strand, within ABZR87_RS04840at 1016.594 kb on + strand, within ABZR87_RS04840at 1016.594 kb on + strand, within ABZR87_RS04840at 1016.594 kb on + strand, within ABZR87_RS04840at 1016.595 kb on - strand, within ABZR87_RS04840at 1016.595 kb on - strand, within ABZR87_RS04840at 1016.595 kb on - strand, within ABZR87_RS04840at 1016.642 kb on + strand, within ABZR87_RS04840at 1016.642 kb on + strand, within ABZR87_RS04840at 1016.642 kb on + strand, within ABZR87_RS04840at 1016.643 kb on - strand, within ABZR87_RS04840at 1016.643 kb on - strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.708 kb on + strand, within ABZR87_RS04840at 1016.709 kb on - strand, within ABZR87_RS04840at 1016.709 kb on - strand, within ABZR87_RS04840at 1016.841 kb on + strandat 1016.842 kb on - strandat 1016.881 kb on + strandat 1016.881 kb on + strandat 1016.881 kb on + strandat 1016.882 kb on - strandat 1016.882 kb on - strandat 1016.882 kb on - strandat 1016.940 kb on - strandat 1017.037 kb on + strand, within ABZR87_RS04845at 1017.037 kb on + strand, within ABZR87_RS04845at 1017.037 kb on + strand, within ABZR87_RS04845at 1017.037 kb on + strand, within ABZR87_RS04845at 1017.037 kb on + strand, within ABZR87_RS04845at 1017.038 kb on - strand, within ABZR87_RS04845at 1017.038 kb on - strand, within ABZR87_RS04845at 1017.049 kb on + strand, within ABZR87_RS04845at 1017.049 kb on + strand, within ABZR87_RS04845at 1017.050 kb on - strand, within ABZR87_RS04845at 1017.163 kb on + strand, within ABZR87_RS04845at 1017.163 kb on + strand, within ABZR87_RS04845at 1017.164 kb on - strand, within ABZR87_RS04845at 1017.164 kb on - strand, within ABZR87_RS04845at 1017.226 kb on + strand, within ABZR87_RS04845at 1017.514 kb on + strand, within ABZR87_RS04845at 1017.514 kb on + strand, within ABZR87_RS04845at 1017.514 kb on + strand, within ABZR87_RS04845at 1017.515 kb on - strand, within ABZR87_RS04845at 1017.599 kb on - strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.802 kb on + strand, within ABZR87_RS04845at 1017.803 kb on - strand, within ABZR87_RS04845at 1017.806 kb on + strand, within ABZR87_RS04845at 1017.860 kb on - strand, within ABZR87_RS04845

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
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1,014,651 + -0.3
1,014,651 + +0.9
1,014,651 + +0.6
1,014,652 - +0.7
1,014,652 - +0.4
1,014,652 - -0.4
1,014,668 + +1.2
1,014,668 + +0.6
1,014,668 + -0.2
1,014,669 - -0.7
1,014,669 - +1.0
1,014,670 + -0.4
1,014,670 + +0.5
1,014,670 + -0.4
1,014,670 + -1.1
1,014,670 + +0.2
1,014,670 + -0.1
1,014,670 + -0.5
1,014,670 + +1.4
1,014,671 - +0.6
1,014,671 - -0.0
1,014,671 - +1.1
1,014,671 - -0.1
1,014,716 + +0.2
1,014,732 - +0.0
1,014,897 - ABZR87_RS04835 0.29 +0.2
1,015,007 + ABZR87_RS04835 0.45 +0.4
1,015,007 + ABZR87_RS04835 0.45 -0.0
1,015,008 - ABZR87_RS04835 0.45 -0.4
1,015,339 - -0.1
1,015,364 + -0.5
1,015,392 + +0.4
1,015,392 + +0.1
1,015,392 + -0.5
1,015,392 + -0.5
1,015,392 + -0.2
1,015,629 - ABZR87_RS04840 0.12 +0.4
1,015,629 - ABZR87_RS04840 0.12 +0.2
1,015,715 + ABZR87_RS04840 0.18 +0.2
1,015,715 + ABZR87_RS04840 0.18 +0.8
1,015,715 + ABZR87_RS04840 0.18 -2.5
1,015,715 + ABZR87_RS04840 0.18 -0.0
1,015,715 + ABZR87_RS04840 0.18 +0.2
1,015,716 - ABZR87_RS04840 0.18 +1.8
1,015,716 - ABZR87_RS04840 0.18 -0.0
1,015,716 - ABZR87_RS04840 0.18 -0.7
1,015,716 - ABZR87_RS04840 0.18 -0.2
1,015,716 - ABZR87_RS04840 0.18 -1.5
1,015,716 - ABZR87_RS04840 0.18 -0.4
1,015,982 + ABZR87_RS04840 0.37 -0.2
1,016,078 + ABZR87_RS04840 0.44 +0.0
1,016,078 + ABZR87_RS04840 0.44 +0.4
1,016,078 + ABZR87_RS04840 0.44 -0.6
1,016,079 - ABZR87_RS04840 0.44 -0.7
1,016,079 - ABZR87_RS04840 0.44 +0.0
1,016,079 - ABZR87_RS04840 0.44 +0.1
1,016,079 - ABZR87_RS04840 0.44 +0.3
1,016,079 - ABZR87_RS04840 0.44 -0.0
1,016,165 + ABZR87_RS04840 0.50 +0.8
1,016,165 + ABZR87_RS04840 0.50 +0.1
1,016,165 + ABZR87_RS04840 0.50 -0.4
1,016,165 + ABZR87_RS04840 0.50 +0.6
1,016,165 + ABZR87_RS04840 0.50 -1.6
1,016,166 - ABZR87_RS04840 0.50 +0.2
1,016,166 - ABZR87_RS04840 0.50 -0.1
1,016,166 - ABZR87_RS04840 0.50 -0.6
1,016,166 - ABZR87_RS04840 0.50 +0.3
1,016,166 - ABZR87_RS04840 0.50 +0.6
1,016,166 - ABZR87_RS04840 0.50 +0.0
1,016,166 - ABZR87_RS04840 0.50 -0.7
1,016,166 - ABZR87_RS04840 0.50 +1.2
1,016,247 - ABZR87_RS04840 0.56 -0.8
1,016,247 - ABZR87_RS04840 0.56 -0.1
1,016,303 + ABZR87_RS04840 0.60 +0.1
1,016,372 + ABZR87_RS04840 0.65 -1.0
1,016,373 - ABZR87_RS04840 0.65 +0.0
1,016,513 + ABZR87_RS04840 0.75 +0.7
1,016,513 + ABZR87_RS04840 0.75 -0.3
1,016,513 + ABZR87_RS04840 0.75 -0.3
1,016,513 + ABZR87_RS04840 0.75 -0.6
1,016,513 + ABZR87_RS04840 0.75 +0.8
1,016,514 - ABZR87_RS04840 0.75 +0.6
1,016,514 - ABZR87_RS04840 0.75 +0.2
1,016,514 - ABZR87_RS04840 0.75 +0.2
1,016,594 + ABZR87_RS04840 0.81 +1.2
1,016,594 + ABZR87_RS04840 0.81 +0.0
1,016,594 + ABZR87_RS04840 0.81 -0.3
1,016,595 - ABZR87_RS04840 0.81 -0.1
1,016,595 - ABZR87_RS04840 0.81 +0.1
1,016,595 - ABZR87_RS04840 0.81 +0.5
1,016,642 + ABZR87_RS04840 0.84 -0.5
1,016,642 + ABZR87_RS04840 0.84 -0.6
1,016,642 + ABZR87_RS04840 0.84 +0.2
1,016,643 - ABZR87_RS04840 0.84 -0.3
1,016,643 - ABZR87_RS04840 0.84 +0.3
1,016,708 + ABZR87_RS04840 0.89 -0.1
1,016,708 + ABZR87_RS04840 0.89 +0.3
1,016,708 + ABZR87_RS04840 0.89 +0.1
1,016,708 + ABZR87_RS04840 0.89 +0.2
1,016,708 + ABZR87_RS04840 0.89 -0.7
1,016,708 + ABZR87_RS04840 0.89 +0.1
1,016,709 - ABZR87_RS04840 0.89 +0.3
1,016,709 - ABZR87_RS04840 0.89 +1.5
1,016,841 + +0.6
1,016,842 - -1.0
1,016,881 + +1.1
1,016,881 + +0.3
1,016,881 + +0.3
1,016,882 - -0.4
1,016,882 - -1.0
1,016,882 - -0.5
1,016,940 - +1.0
1,017,037 + ABZR87_RS04845 0.11 +0.5
1,017,037 + ABZR87_RS04845 0.11 +0.1
1,017,037 + ABZR87_RS04845 0.11 -0.5
1,017,037 + ABZR87_RS04845 0.11 -1.7
1,017,037 + ABZR87_RS04845 0.11 -0.4
1,017,038 - ABZR87_RS04845 0.11 -0.0
1,017,038 - ABZR87_RS04845 0.11 +0.7
1,017,049 + ABZR87_RS04845 0.12 -0.7
1,017,049 + ABZR87_RS04845 0.12 +0.0
1,017,050 - ABZR87_RS04845 0.12 +0.5
1,017,163 + ABZR87_RS04845 0.19 +0.3
1,017,163 + ABZR87_RS04845 0.19 -0.8
1,017,164 - ABZR87_RS04845 0.19 -0.6
1,017,164 - ABZR87_RS04845 0.19 -0.6
1,017,226 + ABZR87_RS04845 0.24 +1.0
1,017,514 + ABZR87_RS04845 0.43 -0.8
1,017,514 + ABZR87_RS04845 0.43 -0.3
1,017,514 + ABZR87_RS04845 0.43 +0.0
1,017,515 - ABZR87_RS04845 0.44 -0.2
1,017,599 - ABZR87_RS04845 0.49 -0.2
1,017,802 + ABZR87_RS04845 0.63 -0.2
1,017,802 + ABZR87_RS04845 0.63 +0.3
1,017,802 + ABZR87_RS04845 0.63 +0.6
1,017,802 + ABZR87_RS04845 0.63 +1.1
1,017,802 + ABZR87_RS04845 0.63 -0.4
1,017,803 - ABZR87_RS04845 0.63 +0.5
1,017,806 + ABZR87_RS04845 0.64 -0.4
1,017,860 - ABZR87_RS04845 0.67 -0.5

Or see this region's nucleotide sequence