Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03385 and ABZR87_RS03390 are separated by 19 nucleotides ABZR87_RS03390 and ABZR87_RS03395 are separated by 157 nucleotides ABZR87_RS03395 and ABZR87_RS03400 are separated by 219 nucleotides ABZR87_RS03400 and ABZR87_RS03405 are separated by 147 nucleotides
ABZR87_RS03385: ABZR87_RS03385 - 5'-nucleotidase, at 708,188 to 709,126
_RS03385
ABZR87_RS03390: ABZR87_RS03390 - Lrp/AsnC family transcriptional regulator, at 709,146 to 709,634
_RS03390
ABZR87_RS03395: ABZR87_RS03395 - 4-hydroxyphenylpyruvate dioxygenase, at 709,792 to 710,898
_RS03395
ABZR87_RS03400: ABZR87_RS03400 - EF-hand domain-containing protein, at 711,118 to 711,735
_RS03400
ABZR87_RS03405: ABZR87_RS03405 - type II secretion system protein N, at 711,883 to 712,566
_RS03405
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.793 kb on - strand, within ABZR87_RS03385 at 708.793 kb on - strand, within ABZR87_RS03385 at 708.811 kb on + strand, within ABZR87_RS03385 at 708.811 kb on + strand, within ABZR87_RS03385 at 708.811 kb on + strand, within ABZR87_RS03385 at 708.812 kb on - strand, within ABZR87_RS03385 at 708.812 kb on - strand, within ABZR87_RS03385 at 708.830 kb on - strand, within ABZR87_RS03385 at 708.850 kb on + strand, within ABZR87_RS03385 at 708.866 kb on + strand, within ABZR87_RS03385 at 708.866 kb on + strand, within ABZR87_RS03385 at 708.867 kb on - strand, within ABZR87_RS03385 at 708.867 kb on - strand, within ABZR87_RS03385 at 708.893 kb on + strand, within ABZR87_RS03385 at 708.894 kb on - strand, within ABZR87_RS03385 at 708.896 kb on + strand, within ABZR87_RS03385 at 708.896 kb on + strand, within ABZR87_RS03385 at 708.896 kb on + strand, within ABZR87_RS03385 at 708.897 kb on - strand, within ABZR87_RS03385 at 708.897 kb on - strand, within ABZR87_RS03385 at 708.897 kb on - strand, within ABZR87_RS03385 at 708.995 kb on + strand, within ABZR87_RS03385 at 708.996 kb on - strand, within ABZR87_RS03385 at 709.098 kb on - strand at 709.098 kb on - strand at 709.098 kb on - strand at 709.112 kb on + strand at 709.112 kb on + strand at 709.112 kb on + strand at 709.113 kb on - strand at 709.113 kb on - strand at 709.120 kb on - strand at 709.127 kb on + strand at 709.127 kb on + strand at 709.127 kb on + strand at 709.132 kb on - strand at 709.139 kb on + strand at 709.172 kb on + strand at 709.275 kb on + strand, within ABZR87_RS03390 at 709.275 kb on + strand, within ABZR87_RS03390 at 709.276 kb on - strand, within ABZR87_RS03390 at 709.276 kb on - strand, within ABZR87_RS03390 at 709.276 kb on - strand, within ABZR87_RS03390 at 709.276 kb on - strand, within ABZR87_RS03390 at 709.294 kb on + strand, within ABZR87_RS03390 at 709.294 kb on + strand, within ABZR87_RS03390 at 709.295 kb on - strand, within ABZR87_RS03390 at 709.295 kb on - strand, within ABZR87_RS03390 at 709.295 kb on - strand, within ABZR87_RS03390 at 709.295 kb on - strand, within ABZR87_RS03390 at 709.318 kb on + strand, within ABZR87_RS03390 at 709.318 kb on + strand, within ABZR87_RS03390 at 709.318 kb on + strand, within ABZR87_RS03390 at 709.318 kb on + strand, within ABZR87_RS03390 at 709.319 kb on - strand, within ABZR87_RS03390 at 709.319 kb on - strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.423 kb on + strand, within ABZR87_RS03390 at 709.424 kb on - strand, within ABZR87_RS03390 at 709.424 kb on - strand, within ABZR87_RS03390 at 709.471 kb on + strand, within ABZR87_RS03390 at 709.654 kb on + strand at 709.682 kb on - strand at 709.728 kb on + strand at 709.728 kb on + strand at 709.728 kb on + strand at 709.728 kb on + strand at 709.728 kb on + strand at 709.728 kb on + strand at 709.729 kb on - strand at 709.729 kb on - strand at 709.729 kb on - strand at 709.729 kb on - strand at 709.850 kb on - strand at 709.903 kb on - strand, within ABZR87_RS03395 at 709.903 kb on - strand, within ABZR87_RS03395 at 709.942 kb on + strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 709.943 kb on - strand, within ABZR87_RS03395 at 710.013 kb on - strand, within ABZR87_RS03395 at 710.013 kb on - strand, within ABZR87_RS03395 at 710.013 kb on - strand, within ABZR87_RS03395 at 710.068 kb on + strand, within ABZR87_RS03395 at 710.068 kb on + strand, within ABZR87_RS03395 at 710.170 kb on + strand, within ABZR87_RS03395 at 710.170 kb on + strand, within ABZR87_RS03395 at 710.171 kb on - strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.236 kb on + strand, within ABZR87_RS03395 at 710.237 kb on - strand, within ABZR87_RS03395 at 710.237 kb on - strand, within ABZR87_RS03395 at 710.237 kb on - strand, within ABZR87_RS03395 at 710.237 kb on - strand, within ABZR87_RS03395 at 710.237 kb on - strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.299 kb on + strand, within ABZR87_RS03395 at 710.300 kb on - strand, within ABZR87_RS03395 at 710.300 kb on - strand, within ABZR87_RS03395 at 710.300 kb on - strand, within ABZR87_RS03395 at 710.300 kb on - strand, within ABZR87_RS03395 at 710.300 kb on - strand, within ABZR87_RS03395 at 710.326 kb on + strand, within ABZR87_RS03395 at 710.326 kb on + strand, within ABZR87_RS03395 at 710.327 kb on - strand, within ABZR87_RS03395 at 710.359 kb on + strand, within ABZR87_RS03395 at 710.359 kb on + strand, within ABZR87_RS03395 at 710.360 kb on - strand, within ABZR87_RS03395 at 710.360 kb on - strand, within ABZR87_RS03395 at 710.360 kb on - strand, within ABZR87_RS03395 at 710.392 kb on + strand, within ABZR87_RS03395 at 710.512 kb on + strand, within ABZR87_RS03395 at 710.512 kb on + strand, within ABZR87_RS03395 at 710.513 kb on - strand, within ABZR87_RS03395 at 710.513 kb on - strand, within ABZR87_RS03395 at 710.524 kb on + strand, within ABZR87_RS03395 at 710.524 kb on + strand, within ABZR87_RS03395 at 710.524 kb on + strand, within ABZR87_RS03395 at 710.524 kb on + strand, within ABZR87_RS03395 at 710.524 kb on + strand, within ABZR87_RS03395 at 710.525 kb on - strand, within ABZR87_RS03395 at 710.525 kb on - strand, within ABZR87_RS03395 at 710.525 kb on - strand, within ABZR87_RS03395 at 710.525 kb on - strand, within ABZR87_RS03395 at 710.525 kb on - strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.632 kb on + strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.633 kb on - strand, within ABZR87_RS03395 at 710.635 kb on + strand, within ABZR87_RS03395 at 710.635 kb on + strand, within ABZR87_RS03395 at 710.636 kb on - strand, within ABZR87_RS03395 at 710.924 kb on + strand at 710.962 kb on - strand at 711.047 kb on + strand at 711.048 kb on - strand at 711.066 kb on + strand at 711.097 kb on + strand at 711.097 kb on + strand at 711.171 kb on + strand at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.764 kb on - strand at 711.764 kb on - strand at 711.771 kb on + strand at 711.771 kb on + strand at 711.772 kb on - strand at 711.772 kb on - strand at 711.772 kb on - strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.838 kb on + strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 708,793 - ABZR87_RS03385 0.64 -0.1 708,793 - ABZR87_RS03385 0.64 +0.8 708,811 + ABZR87_RS03385 0.66 +0.8 708,811 + ABZR87_RS03385 0.66 -0.0 708,811 + ABZR87_RS03385 0.66 +0.6 708,812 - ABZR87_RS03385 0.66 -0.1 708,812 - ABZR87_RS03385 0.66 -0.3 708,830 - ABZR87_RS03385 0.68 -0.2 708,850 + ABZR87_RS03385 0.71 -0.0 708,866 + ABZR87_RS03385 0.72 -0.4 708,866 + ABZR87_RS03385 0.72 +1.4 708,867 - ABZR87_RS03385 0.72 -0.1 708,867 - ABZR87_RS03385 0.72 +0.2 708,893 + ABZR87_RS03385 0.75 +0.6 708,894 - ABZR87_RS03385 0.75 +0.2 708,896 + ABZR87_RS03385 0.75 +0.4 708,896 + ABZR87_RS03385 0.75 -0.1 708,896 + ABZR87_RS03385 0.75 -0.4 708,897 - ABZR87_RS03385 0.76 -0.1 708,897 - ABZR87_RS03385 0.76 -0.6 708,897 - ABZR87_RS03385 0.76 +0.1 708,995 + ABZR87_RS03385 0.86 +0.4 708,996 - ABZR87_RS03385 0.86 +0.6 709,098 - +0.2 709,098 - +1.4 709,098 - +0.3 709,112 + -0.2 709,112 + +0.2 709,112 + +1.1 709,113 - -0.1 709,113 - -0.1 709,120 - +0.8 709,127 + +0.2 709,127 + -0.1 709,127 + -0.4 709,132 - -0.2 709,139 + +0.2 709,172 + -1.2 709,275 + ABZR87_RS03390 0.26 -0.2 709,275 + ABZR87_RS03390 0.26 +0.1 709,276 - ABZR87_RS03390 0.27 +0.0 709,276 - ABZR87_RS03390 0.27 -0.3 709,276 - ABZR87_RS03390 0.27 -0.4 709,276 - ABZR87_RS03390 0.27 +0.4 709,294 + ABZR87_RS03390 0.30 -0.5 709,294 + ABZR87_RS03390 0.30 -0.1 709,295 - ABZR87_RS03390 0.30 -0.1 709,295 - ABZR87_RS03390 0.30 -1.0 709,295 - ABZR87_RS03390 0.30 -0.5 709,295 - ABZR87_RS03390 0.30 -0.1 709,318 + ABZR87_RS03390 0.35 +0.7 709,318 + ABZR87_RS03390 0.35 -0.2 709,318 + ABZR87_RS03390 0.35 +0.2 709,318 + ABZR87_RS03390 0.35 -0.5 709,319 - ABZR87_RS03390 0.35 -0.4 709,319 - ABZR87_RS03390 0.35 +0.3 709,423 + ABZR87_RS03390 0.57 -0.4 709,423 + ABZR87_RS03390 0.57 +0.5 709,423 + ABZR87_RS03390 0.57 -0.9 709,423 + ABZR87_RS03390 0.57 +0.4 709,423 + ABZR87_RS03390 0.57 -0.3 709,423 + ABZR87_RS03390 0.57 +0.5 709,424 - ABZR87_RS03390 0.57 -0.5 709,424 - ABZR87_RS03390 0.57 -1.6 709,471 + ABZR87_RS03390 0.66 -1.1 709,654 + +0.5 709,682 - -0.3 709,728 + +0.6 709,728 + -0.0 709,728 + +1.0 709,728 + -0.2 709,728 + +0.0 709,728 + -0.4 709,729 - -2.4 709,729 - -1.4 709,729 - +0.4 709,729 - +0.4 709,850 - -1.1 709,903 - ABZR87_RS03395 0.10 -1.1 709,903 - ABZR87_RS03395 0.10 +0.0 709,942 + ABZR87_RS03395 0.14 +0.3 709,943 - ABZR87_RS03395 0.14 -0.4 709,943 - ABZR87_RS03395 0.14 +0.3 709,943 - ABZR87_RS03395 0.14 -0.0 709,943 - ABZR87_RS03395 0.14 -0.3 709,943 - ABZR87_RS03395 0.14 -0.4 709,943 - ABZR87_RS03395 0.14 -0.7 709,943 - ABZR87_RS03395 0.14 -0.3 709,943 - ABZR87_RS03395 0.14 -0.5 710,013 - ABZR87_RS03395 0.20 +0.2 710,013 - ABZR87_RS03395 0.20 -0.0 710,013 - ABZR87_RS03395 0.20 +0.3 710,068 + ABZR87_RS03395 0.25 -0.6 710,068 + ABZR87_RS03395 0.25 +1.4 710,170 + ABZR87_RS03395 0.34 +0.6 710,170 + ABZR87_RS03395 0.34 +0.4 710,171 - ABZR87_RS03395 0.34 -0.0 710,236 + ABZR87_RS03395 0.40 +0.2 710,236 + ABZR87_RS03395 0.40 +0.6 710,236 + ABZR87_RS03395 0.40 -1.0 710,236 + ABZR87_RS03395 0.40 -0.1 710,236 + ABZR87_RS03395 0.40 -0.4 710,236 + ABZR87_RS03395 0.40 -0.2 710,236 + ABZR87_RS03395 0.40 +0.2 710,236 + ABZR87_RS03395 0.40 -0.0 710,236 + ABZR87_RS03395 0.40 -0.6 710,236 + ABZR87_RS03395 0.40 +0.3 710,236 + ABZR87_RS03395 0.40 +0.8 710,236 + ABZR87_RS03395 0.40 -0.2 710,237 - ABZR87_RS03395 0.40 -0.6 710,237 - ABZR87_RS03395 0.40 +0.4 710,237 - ABZR87_RS03395 0.40 -0.0 710,237 - ABZR87_RS03395 0.40 -0.4 710,237 - ABZR87_RS03395 0.40 +0.5 710,299 + ABZR87_RS03395 0.46 -0.3 710,299 + ABZR87_RS03395 0.46 +0.2 710,299 + ABZR87_RS03395 0.46 +0.2 710,299 + ABZR87_RS03395 0.46 -0.0 710,299 + ABZR87_RS03395 0.46 +0.1 710,299 + ABZR87_RS03395 0.46 -0.8 710,300 - ABZR87_RS03395 0.46 +0.2 710,300 - ABZR87_RS03395 0.46 +0.8 710,300 - ABZR87_RS03395 0.46 -1.1 710,300 - ABZR87_RS03395 0.46 +0.7 710,300 - ABZR87_RS03395 0.46 -0.6 710,326 + ABZR87_RS03395 0.48 -1.5 710,326 + ABZR87_RS03395 0.48 -1.6 710,327 - ABZR87_RS03395 0.48 +0.1 710,359 + ABZR87_RS03395 0.51 +0.1 710,359 + ABZR87_RS03395 0.51 -0.5 710,360 - ABZR87_RS03395 0.51 -2.2 710,360 - ABZR87_RS03395 0.51 +0.1 710,360 - ABZR87_RS03395 0.51 +0.1 710,392 + ABZR87_RS03395 0.54 -0.2 710,512 + ABZR87_RS03395 0.65 +0.2 710,512 + ABZR87_RS03395 0.65 +0.4 710,513 - ABZR87_RS03395 0.65 -0.5 710,513 - ABZR87_RS03395 0.65 -0.2 710,524 + ABZR87_RS03395 0.66 -0.4 710,524 + ABZR87_RS03395 0.66 -0.6 710,524 + ABZR87_RS03395 0.66 -0.3 710,524 + ABZR87_RS03395 0.66 +0.7 710,524 + ABZR87_RS03395 0.66 -0.4 710,525 - ABZR87_RS03395 0.66 -0.1 710,525 - ABZR87_RS03395 0.66 -0.6 710,525 - ABZR87_RS03395 0.66 -0.6 710,525 - ABZR87_RS03395 0.66 +0.1 710,525 - ABZR87_RS03395 0.66 +0.0 710,632 + ABZR87_RS03395 0.76 -0.5 710,632 + ABZR87_RS03395 0.76 -0.3 710,632 + ABZR87_RS03395 0.76 +0.1 710,632 + ABZR87_RS03395 0.76 -0.5 710,632 + ABZR87_RS03395 0.76 +0.0 710,632 + ABZR87_RS03395 0.76 -0.0 710,632 + ABZR87_RS03395 0.76 -1.0 710,633 - ABZR87_RS03395 0.76 +0.2 710,633 - ABZR87_RS03395 0.76 +0.5 710,633 - ABZR87_RS03395 0.76 -0.7 710,633 - ABZR87_RS03395 0.76 -0.4 710,633 - ABZR87_RS03395 0.76 -0.3 710,633 - ABZR87_RS03395 0.76 -0.6 710,633 - ABZR87_RS03395 0.76 +2.2 710,633 - ABZR87_RS03395 0.76 +0.6 710,633 - ABZR87_RS03395 0.76 +0.0 710,635 + ABZR87_RS03395 0.76 -0.2 710,635 + ABZR87_RS03395 0.76 -0.2 710,636 - ABZR87_RS03395 0.76 -0.1 710,924 + +0.4 710,962 - -0.2 711,047 + +0.1 711,048 - +0.2 711,066 + -0.6 711,097 + +0.4 711,097 + -0.3 711,171 + +0.2 711,212 + ABZR87_RS03400 0.15 -0.2 711,212 + ABZR87_RS03400 0.15 -0.2 711,212 + ABZR87_RS03400 0.15 +0.2 711,212 + ABZR87_RS03400 0.15 +0.5 711,212 + ABZR87_RS03400 0.15 -0.4 711,212 + ABZR87_RS03400 0.15 -1.3 711,212 + ABZR87_RS03400 0.15 +0.8 711,212 + ABZR87_RS03400 0.15 +0.1 711,213 - ABZR87_RS03400 0.15 +0.1 711,213 - ABZR87_RS03400 0.15 -0.3 711,213 - ABZR87_RS03400 0.15 +0.0 711,213 - ABZR87_RS03400 0.15 +1.8 711,213 - ABZR87_RS03400 0.15 +0.2 711,764 - -0.1 711,764 - +0.1 711,771 + +0.3 711,771 + +0.5 711,772 - -0.2 711,772 - -0.0 711,772 - +0.2 711,805 + -0.6 711,805 + -0.3 711,806 - +0.4 711,806 - +0.3 711,835 + -0.6 711,835 + -0.6 711,835 + -0.5 711,835 + +0.2 711,835 + +0.5 711,835 + -1.1 711,835 + +0.7 711,835 + -0.9 711,835 + +0.4 711,835 + +0.2 711,836 - +0.0 711,836 - +0.5 711,836 - +1.4 711,836 - -0.8 711,836 - +1.5 711,838 + -0.2 711,839 - -0.0 711,839 - -0.1 711,839 - -0.8 711,839 - +0.8 711,839 - -0.6 711,839 - +0.4 711,839 - +0.8 711,884 + -0.9 711,884 + +0.1 711,884 + -0.7 711,884 + -0.5 711,884 + +0.4 711,885 - -0.2 711,885 - -1.0 711,885 - +0.0 711,885 - +0.9
Or see this region's nucleotide sequence