Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotides ABZR87_RS02490 and ABZR87_RS02495 overlap by 4 nucleotides ABZR87_RS02495 and ABZR87_RS02500 are separated by 16 nucleotides
ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107
_RS02485
ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753
_RS02490
ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874
_RS02495
ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219
_RS02500
Position (kb) 528
529
530 Strain fitness (log2 ratio) -1
0
1 at 527.905 kb on - strand, within ABZR87_RS02485 at 528.165 kb on - strand at 528.165 kb on - strand at 528.165 kb on - strand at 528.857 kb on + strand at 528.858 kb on - strand at 528.869 kb on + strand, within ABZR87_RS02495 at 528.870 kb on - strand, within ABZR87_RS02495 at 529.095 kb on - strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.097 kb on - strand, within ABZR87_RS02495 at 529.151 kb on - strand, within ABZR87_RS02495 at 529.258 kb on + strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.453 kb on - strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.735 kb on + strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.789 kb on + strand at 529.790 kb on - strand at 529.790 kb on - strand at 529.902 kb on + strand at 529.902 kb on + strand at 529.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 527,905 - ABZR87_RS02485 0.67 -0.1 528,165 - +0.3 528,165 - +0.6 528,165 - +0.4 528,857 + -0.4 528,858 - +0.7 528,869 + ABZR87_RS02495 0.11 +1.0 528,870 - ABZR87_RS02495 0.11 -0.2 529,095 - ABZR87_RS02495 0.31 -0.7 529,096 + ABZR87_RS02495 0.31 -0.5 529,096 + ABZR87_RS02495 0.31 -0.5 529,096 + ABZR87_RS02495 0.31 -0.5 529,096 + ABZR87_RS02495 0.31 -0.7 529,097 - ABZR87_RS02495 0.31 -0.4 529,151 - ABZR87_RS02495 0.36 +0.2 529,258 + ABZR87_RS02495 0.45 +0.2 529,259 - ABZR87_RS02495 0.45 -0.5 529,259 - ABZR87_RS02495 0.45 +0.2 529,259 - ABZR87_RS02495 0.45 -0.2 529,375 + ABZR87_RS02495 0.56 -1.2 529,375 + ABZR87_RS02495 0.56 -0.8 529,375 + ABZR87_RS02495 0.56 -0.1 529,375 + ABZR87_RS02495 0.56 +0.3 529,375 + ABZR87_RS02495 0.56 -0.7 529,376 - ABZR87_RS02495 0.56 -0.2 529,376 - ABZR87_RS02495 0.56 -0.2 529,376 - ABZR87_RS02495 0.56 -0.2 529,453 - ABZR87_RS02495 0.62 +0.0 529,495 + ABZR87_RS02495 0.66 -0.3 529,495 + ABZR87_RS02495 0.66 -0.2 529,496 - ABZR87_RS02495 0.66 +0.4 529,496 - ABZR87_RS02495 0.66 +0.3 529,496 - ABZR87_RS02495 0.66 -0.2 529,496 - ABZR87_RS02495 0.66 +0.3 529,496 - ABZR87_RS02495 0.66 -0.8 529,735 + ABZR87_RS02495 0.88 -0.3 529,736 - ABZR87_RS02495 0.88 +0.2 529,736 - ABZR87_RS02495 0.88 +0.2 529,736 - ABZR87_RS02495 0.88 -0.0 529,789 + -1.4 529,790 - -1.0 529,790 - -0.5 529,902 + -1.1 529,902 + -1.3 529,903 - +0.6
Or see this region's nucleotide sequence