Strain Fitness in Shewanella loihica PV-4 around Shew_3597

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3595 and Shew_3596 are separated by 112 nucleotidesShew_3596 and Shew_3597 are separated by 156 nucleotidesShew_3597 and Shew_3598 are separated by 169 nucleotidesShew_3598 and Shew_3599 are separated by 99 nucleotides Shew_3595: Shew_3595 - hypothetical protein (RefSeq), at 4,292,936 to 4,293,388 _3595 Shew_3596: Shew_3596 - methyltransferase type 11 (RefSeq), at 4,293,501 to 4,294,226 _3596 Shew_3597: Shew_3597 - inner membrane protein YjeH (RefSeq), at 4,294,383 to 4,295,642 _3597 Shew_3598: Shew_3598 - AsnC family transcriptional regulator (RefSeq), at 4,295,812 to 4,296,240 _3598 Shew_3599: Shew_3599 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq), at 4,296,340 to 4,298,043 _3599 Position (kb) 4294 4295 4296Strain fitness (log2 ratio) -1 0 1at 4293.391 kb on - strandat 4293.462 kb on + strandat 4293.646 kb on - strand, within Shew_3596at 4293.989 kb on + strand, within Shew_3596at 4294.020 kb on + strand, within Shew_3596at 4294.418 kb on - strandat 4294.716 kb on + strand, within Shew_3597at 4294.847 kb on + strand, within Shew_3597at 4294.914 kb on - strand, within Shew_3597at 4295.120 kb on + strand, within Shew_3597at 4295.143 kb on - strand, within Shew_3597at 4295.149 kb on + strand, within Shew_3597at 4295.519 kb on - strandat 4295.827 kb on - strandat 4295.957 kb on + strand, within Shew_3598at 4296.416 kb on - strandat 4296.533 kb on + strand, within Shew_3599at 4296.551 kb on - strand, within Shew_3599at 4296.619 kb on + strand, within Shew_3599

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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4,293,391 - +0.0
4,293,462 + +0.5
4,293,646 - Shew_3596 0.20 +0.9
4,293,989 + Shew_3596 0.67 -0.1
4,294,020 + Shew_3596 0.71 +0.6
4,294,418 - -1.3
4,294,716 + Shew_3597 0.26 -0.9
4,294,847 + Shew_3597 0.37 +0.8
4,294,914 - Shew_3597 0.42 -1.0
4,295,120 + Shew_3597 0.58 -1.2
4,295,143 - Shew_3597 0.60 -1.3
4,295,149 + Shew_3597 0.61 -1.1
4,295,519 - -1.0
4,295,827 - +0.5
4,295,957 + Shew_3598 0.34 -1.1
4,296,416 - -0.2
4,296,533 + Shew_3599 0.11 +0.4
4,296,551 - Shew_3599 0.12 -0.1
4,296,619 + Shew_3599 0.16 +0.9

Or see this region's nucleotide sequence