Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3595 and Shew_3596 are separated by 112 nucleotides Shew_3596 and Shew_3597 are separated by 156 nucleotides Shew_3597 and Shew_3598 are separated by 169 nucleotides Shew_3598 and Shew_3599 are separated by 99 nucleotides
Shew_3595: Shew_3595 - hypothetical protein (RefSeq), at 4,292,936 to 4,293,388
_3595
Shew_3596: Shew_3596 - methyltransferase type 11 (RefSeq), at 4,293,501 to 4,294,226
_3596
Shew_3597: Shew_3597 - inner membrane protein YjeH (RefSeq), at 4,294,383 to 4,295,642
_3597
Shew_3598: Shew_3598 - AsnC family transcriptional regulator (RefSeq), at 4,295,812 to 4,296,240
_3598
Shew_3599: Shew_3599 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq), at 4,296,340 to 4,298,043
_3599
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -1
0
1 at 4293.391 kb on - strand at 4293.462 kb on + strand at 4293.646 kb on - strand, within Shew_3596 at 4293.989 kb on + strand, within Shew_3596 at 4294.020 kb on + strand, within Shew_3596 at 4294.418 kb on - strand at 4294.716 kb on + strand, within Shew_3597 at 4294.847 kb on + strand, within Shew_3597 at 4294.914 kb on - strand, within Shew_3597 at 4295.120 kb on + strand, within Shew_3597 at 4295.143 kb on - strand, within Shew_3597 at 4295.149 kb on + strand, within Shew_3597 at 4295.519 kb on - strand at 4295.827 kb on - strand at 4295.957 kb on + strand, within Shew_3598 at 4296.416 kb on - strand at 4296.533 kb on + strand, within Shew_3599 at 4296.551 kb on - strand, within Shew_3599 at 4296.619 kb on + strand, within Shew_3599
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 4,293,391 - +0.0 4,293,462 + +0.5 4,293,646 - Shew_3596 0.20 +0.9 4,293,989 + Shew_3596 0.67 -0.1 4,294,020 + Shew_3596 0.71 +0.6 4,294,418 - -1.3 4,294,716 + Shew_3597 0.26 -0.9 4,294,847 + Shew_3597 0.37 +0.8 4,294,914 - Shew_3597 0.42 -1.0 4,295,120 + Shew_3597 0.58 -1.2 4,295,143 - Shew_3597 0.60 -1.3 4,295,149 + Shew_3597 0.61 -1.1 4,295,519 - -1.0 4,295,827 - +0.5 4,295,957 + Shew_3598 0.34 -1.1 4,296,416 - -0.2 4,296,533 + Shew_3599 0.11 +0.4 4,296,551 - Shew_3599 0.12 -0.1 4,296,619 + Shew_3599 0.16 +0.9
Or see this region's nucleotide sequence