Strain Fitness in Shewanella loihica PV-4 around Shew_2879

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2877 and Shew_2878 are separated by 5 nucleotidesShew_2878 and Shew_2879 overlap by 1 nucleotidesShew_2879 and Shew_2880 overlap by 8 nucleotides Shew_2877: Shew_2877 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 3,417,124 to 3,417,732 _2877 Shew_2878: Shew_2878 - Na(+)-translocating NADH-quinone reductase subunit D (RefSeq), at 3,417,738 to 3,418,370 _2878 Shew_2879: Shew_2879 - Na(+)-translocating NADH-quinone reductase subunit C (RefSeq), at 3,418,370 to 3,419,164 _2879 Shew_2880: Shew_2880 - Na(+)-translocating NADH-quinone reductase subunit B (RefSeq), at 3,419,157 to 3,420,356 _2880 Position (kb) 3418 3419 3420Strain fitness (log2 ratio) -2 -1 0 1at 3419.835 kb on - strand, within Shew_2880

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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3,419,835 - Shew_2880 0.56 -2.0

Or see this region's nucleotide sequence