Strain Fitness in Shewanella loihica PV-4 around Shew_1831

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1829 and Shew_1830 are separated by 136 nucleotidesShew_1830 and Shew_1831 are separated by 97 nucleotidesShew_1831 and Shew_1832 are separated by 8 nucleotides Shew_1829: Shew_1829 - hypothetical protein (RefSeq), at 2,105,252 to 2,105,743 _1829 Shew_1830: Shew_1830 - ribosomal protein L25 (RefSeq), at 2,105,880 to 2,106,167 _1830 Shew_1831: Shew_1831 - hypothetical protein (RefSeq), at 2,106,265 to 2,107,797 _1831 Shew_1832: Shew_1832 - hypothetical protein (RefSeq), at 2,107,806 to 2,109,074 _1832 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -1 0 1at 2106.811 kb on + strand, within Shew_1831at 2108.498 kb on - strand, within Shew_1832at 2108.777 kb on - strand, within Shew_1832

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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2,106,811 + Shew_1831 0.36 -0.8
2,108,498 - Shew_1832 0.55 +0.1
2,108,777 - Shew_1832 0.77 +0.4

Or see this region's nucleotide sequence