Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0757 and Shew_0758 are separated by 188 nucleotides Shew_0758 and Shew_0759 are separated by 11 nucleotides Shew_0759 and Shew_0760 are separated by 458 nucleotides
Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577
_0757
Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287
_0758
Shew_0759: Shew_0759 - cytochrome c, putative (RefSeq), at 860,299 to 861,120
_0759
Shew_0760: Shew_0760 - response regulator receiver protein (RefSeq), at 861,579 to 862,400
_0760
Position (kb) 860
861
862 Strain fitness (log2 ratio) -1
0
1 at 859.396 kb on - strand, within Shew_0757 at 859.474 kb on - strand, within Shew_0757 at 859.686 kb on - strand at 859.879 kb on - strand, within Shew_0758 at 859.879 kb on - strand, within Shew_0758 at 859.903 kb on - strand, within Shew_0758 at 860.139 kb on - strand, within Shew_0758 at 860.161 kb on + strand, within Shew_0758 at 860.460 kb on - strand, within Shew_0759 at 860.470 kb on - strand, within Shew_0759 at 860.705 kb on + strand, within Shew_0759 at 861.054 kb on - strand at 861.545 kb on + strand at 862.000 kb on + strand, within Shew_0760 at 862.008 kb on - strand, within Shew_0760 at 862.108 kb on + strand, within Shew_0760
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 859,396 - Shew_0757 0.60 +0.3 859,474 - Shew_0757 0.77 -0.2 859,686 - +0.7 859,879 - Shew_0758 0.22 +0.5 859,879 - Shew_0758 0.22 -0.0 859,903 - Shew_0758 0.26 -0.3 860,139 - Shew_0758 0.71 +0.5 860,161 + Shew_0758 0.76 -0.1 860,460 - Shew_0759 0.20 +0.6 860,470 - Shew_0759 0.21 +0.6 860,705 + Shew_0759 0.49 +0.6 861,054 - +0.3 861,545 + -0.1 862,000 + Shew_0760 0.51 -1.0 862,008 - Shew_0760 0.52 -0.0 862,108 + Shew_0760 0.64 +0.4
Or see this region's nucleotide sequence