Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0619 and Shew_0620 are separated by 58 nucleotides Shew_0620 and Shew_0621 are separated by 80 nucleotides Shew_0621 and Shew_0622 are separated by 60 nucleotides
Shew_0619: Shew_0619 - adenylate cyclase (RefSeq), at 704,222 to 705,709
_0619
Shew_0620: Shew_0620 - ion transport 2 domain-containing protein (RefSeq), at 705,768 to 706,562
_0620
Shew_0621: Shew_0621 - hypothetical protein (RefSeq), at 706,643 to 706,975
_0621
Shew_0622: Shew_0622 - hypothetical protein (RefSeq), at 707,036 to 707,680
_0622
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2 at 704.883 kb on + strand, within Shew_0619 at 705.084 kb on + strand, within Shew_0619 at 705.136 kb on + strand, within Shew_0619 at 705.240 kb on + strand, within Shew_0619 at 705.300 kb on - strand, within Shew_0619 at 705.327 kb on - strand, within Shew_0619 at 705.328 kb on - strand, within Shew_0619 at 705.520 kb on + strand, within Shew_0619 at 706.222 kb on - strand, within Shew_0620 at 706.768 kb on - strand, within Shew_0621 at 706.790 kb on - strand, within Shew_0621 at 706.831 kb on - strand, within Shew_0621 at 706.990 kb on - strand at 707.029 kb on + strand at 707.029 kb on + strand at 707.111 kb on - strand, within Shew_0622 at 707.495 kb on - strand, within Shew_0622
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 704,883 + Shew_0619 0.44 +0.7 705,084 + Shew_0619 0.58 +1.0 705,136 + Shew_0619 0.61 +0.9 705,240 + Shew_0619 0.68 +0.4 705,300 - Shew_0619 0.72 -0.2 705,327 - Shew_0619 0.74 +0.1 705,328 - Shew_0619 0.74 +0.8 705,520 + Shew_0619 0.87 +0.2 706,222 - Shew_0620 0.57 +0.7 706,768 - Shew_0621 0.38 +2.1 706,790 - Shew_0621 0.44 +0.1 706,831 - Shew_0621 0.56 +0.4 706,990 - -0.4 707,029 + -1.8 707,029 + +1.4 707,111 - Shew_0622 0.12 -0.0 707,495 - Shew_0622 0.71 +2.4
Or see this region's nucleotide sequence