Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0476 and Shew_0477 are separated by 31 nucleotides Shew_0477 and Shew_0478 are separated by 619 nucleotides Shew_0478 and Shew_0479 are separated by 2 nucleotides
Shew_0476: Shew_0476 - hypothetical protein (RefSeq), at 533,870 to 534,667
_0476
Shew_0477: Shew_0477 - hypothetical protein (RefSeq), at 534,699 to 535,280
_0477
Shew_0478: Shew_0478 - XRE family transcriptional regulator (RefSeq), at 535,900 to 536,136
_0478
Shew_0479: Shew_0479 - HipA domain-containing protein (RefSeq), at 536,139 to 537,440
_0479
Position (kb) 534
535
536 Strain fitness (log2 ratio) -1
0
1
2 at 533.699 kb on - strand at 533.768 kb on + strand at 533.784 kb on - strand at 533.892 kb on + strand at 533.900 kb on - strand at 533.900 kb on - strand at 533.902 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.922 kb on - strand at 533.940 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 534.011 kb on - strand, within Shew_0476 at 534.046 kb on - strand, within Shew_0476 at 534.122 kb on - strand, within Shew_0476 at 534.129 kb on - strand, within Shew_0476 at 534.203 kb on + strand, within Shew_0476 at 534.244 kb on + strand, within Shew_0476 at 534.298 kb on - strand, within Shew_0476 at 534.316 kb on + strand, within Shew_0476 at 534.377 kb on - strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.481 kb on - strand, within Shew_0476 at 534.521 kb on + strand, within Shew_0476 at 534.553 kb on - strand, within Shew_0476 at 534.635 kb on + strand at 534.753 kb on - strand at 534.758 kb on - strand, within Shew_0477 at 534.891 kb on - strand, within Shew_0477 at 534.903 kb on - strand, within Shew_0477 at 534.903 kb on - strand, within Shew_0477 at 534.924 kb on + strand, within Shew_0477 at 535.129 kb on + strand, within Shew_0477 at 535.129 kb on + strand, within Shew_0477 at 535.241 kb on + strand at 535.301 kb on + strand at 535.524 kb on + strand at 535.639 kb on - strand at 535.704 kb on + strand at 535.878 kb on - strand at 536.049 kb on - strand, within Shew_0478 at 536.130 kb on + strand at 536.186 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 533,699 - +0.6 533,768 + +0.3 533,784 - +0.2 533,892 + +0.2 533,900 - -0.0 533,900 - -0.7 533,902 + +0.2 533,914 + -0.3 533,914 + -0.8 533,914 + -1.3 533,914 + -0.1 533,922 - -0.1 533,940 + +0.2 533,947 + +0.7 533,947 + -0.1 533,947 + +0.6 533,947 + +1.1 533,947 + -0.4 533,947 + +0.9 533,947 + +0.9 533,947 + +1.1 533,947 + +0.1 533,955 - Shew_0476 0.11 +0.1 533,955 - Shew_0476 0.11 -0.1 533,955 - Shew_0476 0.11 +0.1 533,955 - Shew_0476 0.11 -0.3 533,955 - Shew_0476 0.11 +0.9 534,011 - Shew_0476 0.18 -0.0 534,046 - Shew_0476 0.22 -1.1 534,122 - Shew_0476 0.32 -0.1 534,129 - Shew_0476 0.32 +0.3 534,203 + Shew_0476 0.42 +0.2 534,244 + Shew_0476 0.47 -0.0 534,298 - Shew_0476 0.54 +0.1 534,316 + Shew_0476 0.56 +0.5 534,377 - Shew_0476 0.64 +0.2 534,473 + Shew_0476 0.76 -0.1 534,473 + Shew_0476 0.76 +0.6 534,473 + Shew_0476 0.76 -0.1 534,481 - Shew_0476 0.77 +0.4 534,521 + Shew_0476 0.82 -0.1 534,553 - Shew_0476 0.86 +0.3 534,635 + -0.6 534,753 - +0.9 534,758 - Shew_0477 0.10 +0.2 534,891 - Shew_0477 0.33 +0.4 534,903 - Shew_0477 0.35 +0.3 534,903 - Shew_0477 0.35 +0.9 534,924 + Shew_0477 0.39 +1.1 535,129 + Shew_0477 0.74 +1.9 535,129 + Shew_0477 0.74 +0.1 535,241 + +0.4 535,301 + +0.4 535,524 + +0.4 535,639 - +0.4 535,704 + +0.4 535,878 - -0.0 536,049 - Shew_0478 0.63 +1.3 536,130 + +0.5 536,186 + +0.3
Or see this region's nucleotide sequence