Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0416 and Shew_0417 are separated by 168 nucleotides Shew_0417 and Shew_0418 are separated by 3 nucleotides Shew_0418 and Shew_0419 are separated by 35 nucleotides
Shew_0416: Shew_0416 - peptidase U62, modulator of DNA gyrase (RefSeq), at 469,898 to 471,238
_0416
Shew_0417: Shew_0417 - ArsR family transcriptional regulator (RefSeq), at 471,407 to 471,754
_0417
Shew_0418: Shew_0418 - arsenical-resistance protein (RefSeq), at 471,758 to 472,792
_0418
Shew_0419: Shew_0419 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 472,828 to 473,838
_0419
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2 at 470.773 kb on + strand, within Shew_0416 at 470.900 kb on - strand, within Shew_0416 at 470.983 kb on + strand, within Shew_0416 at 470.996 kb on - strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.091 kb on + strand, within Shew_0416 at 471.099 kb on - strand, within Shew_0416 at 471.104 kb on + strand, within Shew_0416 at 471.314 kb on - strand at 471.431 kb on - strand at 471.437 kb on + strand at 471.466 kb on + strand, within Shew_0417 at 471.623 kb on - strand, within Shew_0417 at 471.677 kb on - strand, within Shew_0417 at 472.188 kb on + strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.280 kb on + strand, within Shew_0418 at 472.288 kb on - strand, within Shew_0418 at 472.292 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.413 kb on - strand, within Shew_0418 at 472.416 kb on + strand, within Shew_0418 at 472.435 kb on + strand, within Shew_0418 at 472.473 kb on - strand, within Shew_0418 at 472.595 kb on + strand, within Shew_0418 at 472.690 kb on - strand at 472.794 kb on - strand at 473.607 kb on + strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 470,773 + Shew_0416 0.65 +0.2 470,900 - Shew_0416 0.75 +0.3 470,983 + Shew_0416 0.81 -0.9 470,996 - Shew_0416 0.82 +0.1 471,091 + Shew_0416 0.89 +0.4 471,091 + Shew_0416 0.89 +0.2 471,099 - Shew_0416 0.90 -0.1 471,104 + Shew_0416 0.90 -0.2 471,314 - +0.0 471,431 - +0.1 471,437 + -0.0 471,466 + Shew_0417 0.17 +0.6 471,623 - Shew_0417 0.62 +0.0 471,677 - Shew_0417 0.78 -0.0 472,188 + Shew_0418 0.42 -0.0 472,196 - Shew_0418 0.42 +0.5 472,196 - Shew_0418 0.42 -0.0 472,280 + Shew_0418 0.50 -0.3 472,288 - Shew_0418 0.51 +0.3 472,292 + Shew_0418 0.52 +0.3 472,314 + Shew_0418 0.54 +0.0 472,314 + Shew_0418 0.54 +0.7 472,405 + Shew_0418 0.63 +0.4 472,405 + Shew_0418 0.63 +1.1 472,413 - Shew_0418 0.63 +0.3 472,416 + Shew_0418 0.64 +0.8 472,435 + Shew_0418 0.65 +1.9 472,473 - Shew_0418 0.69 -1.6 472,595 + Shew_0418 0.81 +0.2 472,690 - +0.5 472,794 - -0.6 473,607 + Shew_0419 0.77 +0.1 473,615 - Shew_0419 0.78 -0.1 473,615 - Shew_0419 0.78 +0.6
Or see this region's nucleotide sequence