Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0035 and Shew_0036 are separated by 89 nucleotides Shew_0036 and Shew_0037 are separated by 92 nucleotides
Shew_0035: Shew_0035 - putative lipoprotein (RefSeq), at 40,708 to 41,478
_0035
Shew_0036: Shew_0036 - phosphoesterase, PA-phosphatase related (RefSeq), at 41,568 to 42,389
_0036
Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300
_0037
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.699 kb on - strand at 40.779 kb on - strand at 40.904 kb on - strand, within Shew_0035 at 40.906 kb on + strand, within Shew_0035 at 40.976 kb on - strand, within Shew_0035 at 41.186 kb on + strand, within Shew_0035 at 41.253 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.335 kb on - strand, within Shew_0035 at 41.344 kb on + strand, within Shew_0035 at 41.349 kb on + strand, within Shew_0035 at 41.407 kb on - strand at 41.479 kb on + strand at 41.549 kb on + strand at 41.565 kb on + strand at 41.611 kb on - strand at 41.808 kb on + strand, within Shew_0036 at 41.840 kb on + strand, within Shew_0036 at 41.908 kb on + strand, within Shew_0036 at 42.161 kb on + strand, within Shew_0036 at 42.218 kb on + strand, within Shew_0036 at 42.279 kb on + strand, within Shew_0036 at 42.372 kb on - strand at 42.462 kb on + strand at 42.513 kb on - strand at 42.637 kb on + strand, within Shew_0037 at 42.677 kb on - strand, within Shew_0037 at 42.798 kb on - strand, within Shew_0037 at 42.840 kb on - strand, within Shew_0037 at 42.869 kb on + strand, within Shew_0037 at 43.138 kb on - strand, within Shew_0037 at 43.192 kb on - strand, within Shew_0037
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 40,699 - +0.6 40,779 - +0.1 40,904 - Shew_0035 0.25 +0.2 40,906 + Shew_0035 0.26 -0.4 40,976 - Shew_0035 0.35 +0.0 41,186 + Shew_0035 0.62 +0.1 41,253 + Shew_0035 0.71 +0.2 41,334 + Shew_0035 0.81 +0.2 41,334 + Shew_0035 0.81 +0.2 41,334 + Shew_0035 0.81 +0.4 41,335 - Shew_0035 0.81 +0.0 41,344 + Shew_0035 0.82 +0.4 41,349 + Shew_0035 0.83 +0.3 41,407 - +0.8 41,479 + +0.2 41,549 + -0.6 41,565 + +0.0 41,611 - -0.0 41,808 + Shew_0036 0.29 -0.2 41,840 + Shew_0036 0.33 -0.2 41,908 + Shew_0036 0.41 -0.5 42,161 + Shew_0036 0.72 -0.2 42,218 + Shew_0036 0.79 +0.3 42,279 + Shew_0036 0.86 -0.8 42,372 - +0.1 42,462 + -0.2 42,513 - +0.1 42,637 + Shew_0037 0.19 +0.7 42,677 - Shew_0037 0.24 +0.1 42,798 - Shew_0037 0.39 -0.3 42,840 - Shew_0037 0.44 -0.1 42,869 + Shew_0037 0.47 -0.9 43,138 - Shew_0037 0.80 +0.1 43,192 - Shew_0037 0.87 -0.0
Or see this region's nucleotide sequence