Strain Fitness in Rhodospirillum rubrum S1H around 11723732

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2342 and 11438969 are separated by 129 nucleotides11438969 and 11581332 overlap by 37 nucleotides11581332 and 11723724 overlap by 37 nucleotides11723724 and 11438970 are separated by 0 nucleotides11438970 and 11581333 overlap by 36 nucleotides11581333 and 11723725 overlap by 36 nucleotides11723725 and 11438971 are separated by 0 nucleotides11438971 and 11581334 overlap by 37 nucleotides11581334 and 11723726 overlap by 37 nucleotides11723726 and 11438972 are separated by 0 nucleotides11438972 and 11581335 overlap by 36 nucleotides11581335 and 11723727 overlap by 36 nucleotides11723727 and 11438973 are separated by 0 nucleotides11438973 and 11581336 overlap by 37 nucleotides11581336 and 11723728 overlap by 37 nucleotides11723728 and 11438974 are separated by 0 nucleotides11438974 and 11581337 overlap by 41 nucleotides11581337 and 11723729 overlap by 41 nucleotides11723729 and 11438975 are separated by 0 nucleotides11438975 and 11581338 overlap by 37 nucleotides11581338 and 11723730 overlap by 37 nucleotides11723730 and 11438976 are separated by 0 nucleotides11438976 and 11581339 overlap by 38 nucleotides11581339 and 11723731 overlap by 38 nucleotides11723731 and 11438977 are separated by 0 nucleotides11438977 and 11581340 overlap by 37 nucleotides11581340 and 11723732 overlap by 37 nucleotides11723732 and Rru_A2343 are separated by 262 nucleotides Rru_A2342: Rru_A2342 - hypothetical protein (NCBI), at 2,714,978 to 2,715,835 _A2342 11438969 - no description, at 2,715,965 to 2,716,001 11438969 11581332 - no description, at 2,715,965 to 2,716,001 11581332 11723724 - no description, at 2,715,965 to 2,716,001 11723724 11438970 - no description, at 2,716,002 to 2,716,037 11438970 11581333 - no description, at 2,716,002 to 2,716,037 11581333 11723725 - no description, at 2,716,002 to 2,716,037 11723725 11438971 - no description, at 2,716,038 to 2,716,074 11438971 11581334 - no description, at 2,716,038 to 2,716,074 11581334 11723726 - no description, at 2,716,038 to 2,716,074 11723726 11438972 - no description, at 2,716,075 to 2,716,110 11438972 11581335 - no description, at 2,716,075 to 2,716,110 11581335 11723727 - no description, at 2,716,075 to 2,716,110 11723727 11438973 - no description, at 2,716,111 to 2,716,147 11438973 11581336 - no description, at 2,716,111 to 2,716,147 11581336 11723728 - no description, at 2,716,111 to 2,716,147 11723728 11438974 - no description, at 2,716,148 to 2,716,188 11438974 11581337 - no description, at 2,716,148 to 2,716,188 11581337 11723729 - no description, at 2,716,148 to 2,716,188 11723729 11438975 - no description, at 2,716,189 to 2,716,225 11438975 11581338 - no description, at 2,716,189 to 2,716,225 11581338 11723730 - no description, at 2,716,189 to 2,716,225 11723730 11438976 - no description, at 2,716,226 to 2,716,263 11438976 11581339 - no description, at 2,716,226 to 2,716,263 11581339 11723731 - no description, at 2,716,226 to 2,716,263 11723731 11438977 - no description, at 2,716,264 to 2,716,300 11438977 11581340 - no description, at 2,716,264 to 2,716,300 11581340 11723732 - no description, at 2,716,264 to 2,716,300 11723732 Rru_A2343: Rru_A2343 - Protein of unknown function DUF83 (NCBI), at 2,716,563 to 2,717,564 _A2343 Position (kb) 2716 2717Strain fitness (log2 ratio) -2 -1 0 1 2at 2715.951 kb on + strandat 2715.951 kb on + strandat 2715.951 kb on + strandat 2716.009 kb on - strandat 2716.009 kb on - strandat 2716.052 kb on + strandat 2716.052 kb on + strandat 2716.053 kb on - strandat 2716.079 kb on + strandat 2716.080 kb on - strandat 2716.088 kb on - strandat 2716.094 kb on + strandat 2716.094 kb on + strandat 2716.107 kb on - strandat 2716.125 kb on + strandat 2716.125 kb on + strandat 2716.166 kb on + strandat 2716.167 kb on - strandat 2716.167 kb on - strandat 2716.167 kb on - strandat 2716.204 kb on - strandat 2716.278 kb on + strandat 2716.340 kb on - strandat 2716.340 kb on - strandat 2716.432 kb on - strandat 2716.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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2,715,951 + +0.5
2,715,951 + -1.6
2,715,951 + -0.3
2,716,009 - -0.8
2,716,009 - -0.2
2,716,052 + -1.2
2,716,052 + -0.5
2,716,053 - -2.1
2,716,079 + -1.5
2,716,080 - -2.1
2,716,088 - +1.8
2,716,094 + +0.6
2,716,094 + -0.6
2,716,107 - -1.6
2,716,125 + -0.0
2,716,125 + +0.1
2,716,166 + -0.6
2,716,167 - +0.8
2,716,167 - +0.3
2,716,167 - -1.6
2,716,204 - -1.7
2,716,278 + +1.2
2,716,340 - +0.6
2,716,340 - -0.3
2,716,432 - -0.5
2,716,432 - -1.4

Or see this region's nucleotide sequence