Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0450 and Rru_A0451 are separated by 96 nucleotides Rru_A0451 and Rru_A0452 are separated by 125 nucleotides Rru_A0452 and 11438694 are separated by 67 nucleotides 11438694 and 11581057 overlap by 36 nucleotides 11581057 and 11723449 overlap by 36 nucleotides 11723449 and 11438695 are separated by 0 nucleotides 11438695 and 11581058 overlap by 30 nucleotides 11581058 and 11723450 overlap by 30 nucleotides 11723450 and 11438696 are separated by 0 nucleotides 11438696 and 11581059 overlap by 36 nucleotides 11581059 and 11723451 overlap by 36 nucleotides 11723451 and 11438697 are separated by 0 nucleotides 11438697 and 11581060 overlap by 30 nucleotides 11581060 and 11723452 overlap by 30 nucleotides 11723452 and 11438698 are separated by 0 nucleotides 11438698 and 11581061 overlap by 36 nucleotides 11581061 and 11723453 overlap by 36 nucleotides 11723453 and 11438699 are separated by 0 nucleotides 11438699 and 11581062 overlap by 30 nucleotides 11581062 and 11723454 overlap by 30 nucleotides 11723454 and 11438700 are separated by 0 nucleotides 11438700 and 11581063 overlap by 36 nucleotides 11581063 and 11723455 overlap by 36 nucleotides 11723455 and 11438701 are separated by 0 nucleotides 11438701 and 11581064 overlap by 30 nucleotides 11581064 and 11723456 overlap by 30 nucleotides 11723456 and 11438702 are separated by 0 nucleotides 11438702 and 11581065 overlap by 36 nucleotides 11581065 and 11723457 overlap by 36 nucleotides 11723457 and 11438703 are separated by 0 nucleotides 11438703 and 11581066 overlap by 30 nucleotides 11581066 and 11723458 overlap by 30 nucleotides 11723458 and 11438704 are separated by 0 nucleotides 11438704 and 11581067 overlap by 36 nucleotides 11581067 and 11723459 overlap by 36 nucleotides 11723459 and 11438705 are separated by 0 nucleotides 11438705 and 11581068 overlap by 30 nucleotides 11581068 and 11723460 overlap by 30 nucleotides 11723460 and 11438706 are separated by 0 nucleotides 11438706 and 11581069 overlap by 36 nucleotides 11581069 and 11723461 overlap by 36 nucleotides 11723461 and 11438707 are separated by 0 nucleotides 11438707 and 11581070 overlap by 30 nucleotides 11581070 and 11723462 overlap by 30 nucleotides 11723462 and 11438708 are separated by 0 nucleotides 11438708 and 11581071 overlap by 36 nucleotides 11581071 and 11723463 overlap by 36 nucleotides 11723463 and Rru_A0453 are separated by 180 nucleotides
Rru_A0450: Rru_A0450 - Uncharacterized protein predicted to be involved in DNA repair-like (NCBI), at 528,562 to 529,083
_A0450
Rru_A0451: Rru_A0451 - hypothetical protein (NCBI), at 529,180 to 529,524
_A0451
Rru_A0452: Rru_A0452 - Protein of unknown function DUF196 (NCBI), at 529,650 to 529,988
_A0452
11438694 - no description, at 530,056 to 530,091
11438694
11581057 - no description, at 530,056 to 530,091
11581057
11723449 - no description, at 530,056 to 530,091
11723449
11438695 - no description, at 530,092 to 530,121
11438695
11581058 - no description, at 530,092 to 530,121
11581058
11723450 - no description, at 530,092 to 530,121
11723450
11438696 - no description, at 530,122 to 530,157
11438696
11581059 - no description, at 530,122 to 530,157
11581059
11723451 - no description, at 530,122 to 530,157
11723451
11438697 - no description, at 530,158 to 530,187
11438697
11581060 - no description, at 530,158 to 530,187
11581060
11723452 - no description, at 530,158 to 530,187
11723452
11438698 - no description, at 530,188 to 530,223
11438698
11581061 - no description, at 530,188 to 530,223
11581061
11723453 - no description, at 530,188 to 530,223
11723453
11438699 - no description, at 530,224 to 530,253
11438699
11581062 - no description, at 530,224 to 530,253
11581062
11723454 - no description, at 530,224 to 530,253
11723454
11438700 - no description, at 530,254 to 530,289
11438700
11581063 - no description, at 530,254 to 530,289
11581063
11723455 - no description, at 530,254 to 530,289
11723455
11438701 - no description, at 530,290 to 530,319
11438701
11581064 - no description, at 530,290 to 530,319
11581064
11723456 - no description, at 530,290 to 530,319
11723456
11438702 - no description, at 530,320 to 530,355
11438702
11581065 - no description, at 530,320 to 530,355
11581065
11723457 - no description, at 530,320 to 530,355
11723457
11438703 - no description, at 530,356 to 530,385
11438703
11581066 - no description, at 530,356 to 530,385
11581066
11723458 - no description, at 530,356 to 530,385
11723458
11438704 - no description, at 530,386 to 530,421
11438704
11581067 - no description, at 530,386 to 530,421
11581067
11723459 - no description, at 530,386 to 530,421
11723459
11438705 - no description, at 530,422 to 530,451
11438705
11581068 - no description, at 530,422 to 530,451
11581068
11723460 - no description, at 530,422 to 530,451
11723460
11438706 - no description, at 530,452 to 530,487
11438706
11581069 - no description, at 530,452 to 530,487
11581069
11723461 - no description, at 530,452 to 530,487
11723461
11438707 - no description, at 530,488 to 530,517
11438707
11581070 - no description, at 530,488 to 530,517
11581070
11723462 - no description, at 530,488 to 530,517
11723462
11438708 - no description, at 530,518 to 530,553
11438708
11581071 - no description, at 530,518 to 530,553
11581071
11723463 - no description, at 530,518 to 530,553
11723463
Rru_A0453: Rru_A0453 - HNH endonuclease (NCBI), at 530,734 to 534,255
_A0453
Position (kb) 530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 529.074 kb on - strand at 529.079 kb on - strand at 529.106 kb on + strand at 529.107 kb on - strand at 529.107 kb on - strand at 529.514 kb on + strand at 529.554 kb on + strand at 529.555 kb on - strand at 529.689 kb on + strand, within Rru_A0452 at 529.689 kb on + strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.780 kb on - strand, within Rru_A0452 at 529.780 kb on - strand, within Rru_A0452 at 529.788 kb on + strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.827 kb on + strand, within Rru_A0452 at 529.877 kb on - strand, within Rru_A0452 at 529.933 kb on - strand, within Rru_A0452 at 529.933 kb on - strand, within Rru_A0452 at 529.974 kb on + strand at 529.975 kb on - strand at 530.121 kb on + strand at 530.121 kb on + strand at 530.121 kb on + strand at 530.121 kb on + strand at 530.122 kb on - strand at 530.122 kb on - strand at 530.126 kb on + strand at 530.178 kb on + strand at 530.178 kb on + strand at 530.193 kb on - strand at 530.193 kb on - strand at 530.229 kb on - strand at 530.233 kb on - strand at 530.233 kb on - strand at 530.233 kb on - strand at 530.258 kb on + strand at 530.258 kb on + strand at 530.258 kb on + strand at 530.258 kb on + strand at 530.258 kb on + strand at 530.259 kb on - strand at 530.259 kb on - strand at 530.259 kb on - strand at 530.259 kb on - strand at 530.259 kb on - strand at 530.259 kb on - strand at 530.324 kb on + strand at 530.324 kb on + strand at 530.325 kb on - strand at 530.325 kb on - strand at 530.390 kb on + strand at 530.390 kb on + strand at 530.390 kb on + strand at 530.390 kb on + strand at 530.390 kb on + strand at 530.391 kb on - strand at 530.391 kb on - strand at 530.391 kb on - strand at 530.391 kb on - strand at 530.456 kb on + strand at 530.456 kb on + strand at 530.457 kb on - strand at 530.522 kb on + strand at 530.523 kb on - strand at 530.523 kb on - strand at 530.641 kb on + strand at 530.879 kb on + strand at 530.879 kb on + strand at 530.905 kb on + strand at 530.990 kb on + strand at 530.990 kb on + strand at 530.990 kb on + strand at 530.990 kb on + strand at 530.990 kb on + strand at 530.991 kb on - strand at 530.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 529,074 - -1.8 529,079 - -1.7 529,106 + +0.1 529,107 - +1.2 529,107 - -1.3 529,514 + -0.3 529,554 + +2.0 529,555 - +0.2 529,689 + Rru_A0452 0.12 -1.6 529,689 + Rru_A0452 0.12 +2.0 529,690 - Rru_A0452 0.12 -1.5 529,690 - Rru_A0452 0.12 -1.4 529,690 - Rru_A0452 0.12 +1.2 529,780 - Rru_A0452 0.38 -3.8 529,780 - Rru_A0452 0.38 +2.8 529,788 + Rru_A0452 0.41 -0.7 529,789 - Rru_A0452 0.41 -2.2 529,789 - Rru_A0452 0.41 -2.5 529,789 - Rru_A0452 0.41 -0.8 529,827 + Rru_A0452 0.52 -0.7 529,877 - Rru_A0452 0.67 -2.7 529,933 - Rru_A0452 0.83 -1.0 529,933 - Rru_A0452 0.83 -1.2 529,974 + +2.5 529,975 - -0.2 530,121 + -0.8 530,121 + -0.7 530,121 + -1.2 530,121 + -1.5 530,122 - -1.9 530,122 - -1.1 530,126 + -1.6 530,178 + -0.3 530,178 + -0.8 530,193 - +2.0 530,193 - +3.2 530,229 - +0.4 530,233 - -1.9 530,233 - +0.3 530,233 - -1.7 530,258 + -0.2 530,258 + -1.0 530,258 + +1.2 530,258 + -2.1 530,258 + -2.8 530,259 - -2.4 530,259 - +1.2 530,259 - -2.6 530,259 - +1.3 530,259 - -0.0 530,259 - -3.6 530,324 + -3.2 530,324 + -1.6 530,325 - -1.8 530,325 - +1.7 530,390 + +0.4 530,390 + -0.3 530,390 + -0.8 530,390 + -0.0 530,390 + -2.5 530,391 - -1.8 530,391 - +1.8 530,391 - -2.3 530,391 - -2.3 530,456 + +2.2 530,456 + +1.9 530,457 - -2.9 530,522 + -0.6 530,523 - +0.5 530,523 - -1.7 530,641 + +0.1 530,879 + +3.1 530,879 + -2.3 530,905 + -2.6 530,990 + +0.3 530,990 + -1.3 530,990 + +2.0 530,990 + -0.3 530,990 + -0.3 530,991 - -2.8 530,991 - -0.1
Or see this region's nucleotide sequence