Strain Fitness in Rhodospirillum rubrum S1H around 11580994

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0347 and Rru_A0348 overlap by 1 nucleotidesRru_A0348 and 11438613 are separated by 57 nucleotides11438613 and 11580976 overlap by 28 nucleotides11580976 and 11723368 overlap by 28 nucleotides11723368 and 11438614 are separated by 0 nucleotides11438614 and 11580977 overlap by 33 nucleotides11580977 and 11723369 overlap by 33 nucleotides11723369 and 11438615 are separated by 0 nucleotides11438615 and 11580978 overlap by 28 nucleotides11580978 and 11723370 overlap by 28 nucleotides11723370 and 11438616 are separated by 0 nucleotides11438616 and 11580979 overlap by 33 nucleotides11580979 and 11723371 overlap by 33 nucleotides11723371 and 11438617 are separated by 0 nucleotides11438617 and 11580980 overlap by 28 nucleotides11580980 and 11723372 overlap by 28 nucleotides11723372 and 11438618 are separated by 0 nucleotides11438618 and 11580981 overlap by 33 nucleotides11580981 and 11723373 overlap by 33 nucleotides11723373 and 11438619 are separated by 0 nucleotides11438619 and 11580982 overlap by 28 nucleotides11580982 and 11723374 overlap by 28 nucleotides11723374 and 11438620 are separated by 0 nucleotides11438620 and 11580983 overlap by 33 nucleotides11580983 and 11723375 overlap by 33 nucleotides11723375 and 11438621 are separated by 0 nucleotides11438621 and 11580984 overlap by 28 nucleotides11580984 and 11723376 overlap by 28 nucleotides11723376 and 11438622 are separated by 0 nucleotides11438622 and 11580985 overlap by 33 nucleotides11580985 and 11723377 overlap by 33 nucleotides11723377 and 11438623 are separated by 0 nucleotides11438623 and 11580986 overlap by 28 nucleotides11580986 and 11723378 overlap by 28 nucleotides11723378 and 11438624 are separated by 0 nucleotides11438624 and 11580987 overlap by 33 nucleotides11580987 and 11723379 overlap by 33 nucleotides11723379 and 11438625 are separated by 0 nucleotides11438625 and 11580988 overlap by 28 nucleotides11580988 and 11723380 overlap by 28 nucleotides11723380 and 11438626 are separated by 0 nucleotides11438626 and 11580989 overlap by 33 nucleotides11580989 and 11723381 overlap by 33 nucleotides11723381 and 11438627 are separated by 0 nucleotides11438627 and 11580990 overlap by 28 nucleotides11580990 and 11723382 overlap by 28 nucleotides11723382 and 11438628 are separated by 0 nucleotides11438628 and 11580991 overlap by 33 nucleotides11580991 and 11723383 overlap by 33 nucleotides11723383 and 11438629 are separated by 0 nucleotides11438629 and 11580992 overlap by 28 nucleotides11580992 and 11723384 overlap by 28 nucleotides11723384 and 11438630 are separated by 0 nucleotides11438630 and 11580993 overlap by 33 nucleotides11580993 and 11723385 overlap by 33 nucleotides11723385 and 11438631 are separated by 0 nucleotides11438631 and 11580994 overlap by 28 nucleotides11580994 and 11723386 overlap by 28 nucleotides11723386 and 11438632 are separated by 0 nucleotides11438632 and 11580995 overlap by 33 nucleotides11580995 and 11723387 overlap by 33 nucleotides11723387 and 11438633 are separated by 0 nucleotides11438633 and 11580996 overlap by 28 nucleotides11580996 and 11723388 overlap by 28 nucleotides11723388 and 11438634 are separated by 0 nucleotides11438634 and 11580997 overlap by 33 nucleotides11580997 and 11723389 overlap by 33 nucleotides11723389 and 11438635 are separated by 0 nucleotides11438635 and 11580998 overlap by 28 nucleotides11580998 and 11723390 overlap by 28 nucleotides11723390 and 11438636 are separated by 0 nucleotides11438636 and 11580999 overlap by 33 nucleotides11580999 and 11723391 overlap by 33 nucleotides11723391 and 11438637 are separated by 0 nucleotides11438637 and 11581000 overlap by 28 nucleotides11581000 and 11723392 overlap by 28 nucleotides11723392 and 11438638 are separated by 0 nucleotides11438638 and 11581001 overlap by 33 nucleotides11581001 and 11723393 overlap by 33 nucleotides11723393 and 11438639 are separated by 0 nucleotides11438639 and 11581002 overlap by 28 nucleotides11581002 and 11723394 overlap by 28 nucleotides11723394 and 11438640 are separated by 0 nucleotides11438640 and 11581003 overlap by 33 nucleotides11581003 and 11723395 overlap by 33 nucleotides11723395 and 11438641 are separated by 0 nucleotides11438641 and 11581004 overlap by 28 nucleotides11581004 and 11723396 overlap by 28 nucleotides11723396 and 11438642 are separated by 0 nucleotides11438642 and 11581005 overlap by 33 nucleotides11581005 and 11723397 overlap by 33 nucleotides11723397 and 11438643 are separated by 0 nucleotides11438643 and 11581006 overlap by 28 nucleotides11581006 and 11723398 overlap by 28 nucleotides11723398 and 11438644 are separated by 0 nucleotides11438644 and 11581007 overlap by 33 nucleotides11581007 and 11723399 overlap by 33 nucleotides11723399 and 11438645 are separated by 0 nucleotides11438645 and 11581008 overlap by 28 nucleotides11581008 and 11723400 overlap by 28 nucleotides11723400 and 11438646 are separated by 0 nucleotides11438646 and 11581009 overlap by 33 nucleotides11581009 and 11723401 overlap by 33 nucleotides11723401 and 11438647 are separated by 0 nucleotides11438647 and 11581010 overlap by 28 nucleotides11581010 and 11723402 overlap by 28 nucleotides11723402 and 11438648 are separated by 0 nucleotides11438648 and 11581011 overlap by 33 nucleotides11581011 and 11723403 overlap by 33 nucleotides11723403 and 11438649 are separated by 0 nucleotides11438649 and 11581012 overlap by 28 nucleotides11581012 and 11723404 overlap by 28 nucleotides11723404 and 11438650 are separated by 0 nucleotides11438650 and 11581013 overlap by 33 nucleotides11581013 and 11723405 overlap by 33 nucleotides11723405 and 11438651 are separated by 0 nucleotides11438651 and 11581014 overlap by 28 nucleotides11581014 and 11723406 overlap by 28 nucleotides11723406 and 11438652 are separated by 0 nucleotides11438652 and 11581015 overlap by 33 nucleotides11581015 and 11723407 overlap by 33 nucleotides11723407 and 11438653 are separated by 0 nucleotides11438653 and 11581016 overlap by 28 nucleotides11581016 and 11723408 overlap by 28 nucleotides11723408 and 11438654 are separated by 0 nucleotides11438654 and 11581017 overlap by 33 nucleotides11581017 and 11723409 overlap by 33 nucleotides11723409 and 11438655 are separated by 0 nucleotides11438655 and 11581018 overlap by 28 nucleotides11581018 and 11723410 overlap by 28 nucleotides11723410 and 11438656 are separated by 0 nucleotides11438656 and 11581019 overlap by 33 nucleotides11581019 and 11723411 overlap by 33 nucleotides11723411 and 11438657 are separated by 0 nucleotides11438657 and 11581020 overlap by 28 nucleotides11581020 and 11723412 overlap by 28 nucleotides11723412 and 11438658 are separated by 0 nucleotides11438658 and 11581021 overlap by 33 nucleotides11581021 and 11723413 overlap by 33 nucleotides11723413 and 11438659 are separated by 0 nucleotides11438659 and 11581022 overlap by 28 nucleotides11581022 and 11723414 overlap by 28 nucleotides11723414 and 11438660 are separated by 0 nucleotides11438660 and 11581023 overlap by 33 nucleotides11581023 and 11723415 overlap by 33 nucleotides11723415 and 11438661 are separated by 0 nucleotides11438661 and 11581024 overlap by 28 nucleotides11581024 and 11723416 overlap by 28 nucleotides11723416 and 11438662 are separated by 0 nucleotides11438662 and 11581025 overlap by 33 nucleotides11581025 and 11723417 overlap by 33 nucleotides11723417 and 11438663 are separated by 0 nucleotides11438663 and 11581026 overlap by 28 nucleotides11581026 and 11723418 overlap by 28 nucleotides11723418 and 11438664 are separated by 0 nucleotides Rru_A0347: Rru_A0347 - Protein of unknown function DUF48 (NCBI), at 419,071 to 419,952 _A0347 Rru_A0348: Rru_A0348 - CRISPR-associated protein, Cas2 (NCBI), at 419,952 to 420,275 _A0348 11438613 - no description, at 420,333 to 420,360 11438613 11580976 - no description, at 420,333 to 420,360 11580976 11723368 - no description, at 420,333 to 420,360 11723368 11438614 - no description, at 420,361 to 420,393 11438614 11580977 - no description, at 420,361 to 420,393 11580977 11723369 - no description, at 420,361 to 420,393 11723369 11438615 - no description, at 420,394 to 420,421 11438615 11580978 - no description, at 420,394 to 420,421 11580978 11723370 - no description, at 420,394 to 420,421 11723370 11438616 - no description, at 420,422 to 420,454 11438616 11580979 - no description, at 420,422 to 420,454 11580979 11723371 - no description, at 420,422 to 420,454 11723371 11438617 - no description, at 420,455 to 420,482 11438617 11580980 - no description, at 420,455 to 420,482 11580980 11723372 - no description, at 420,455 to 420,482 11723372 11438618 - no description, at 420,483 to 420,515 11438618 11580981 - no description, at 420,483 to 420,515 11580981 11723373 - no description, at 420,483 to 420,515 11723373 11438619 - no description, at 420,516 to 420,543 11438619 11580982 - no description, at 420,516 to 420,543 11580982 11723374 - no description, at 420,516 to 420,543 11723374 11438620 - no description, at 420,544 to 420,576 11438620 11580983 - no description, at 420,544 to 420,576 11580983 11723375 - no description, at 420,544 to 420,576 11723375 11438621 - no description, at 420,577 to 420,604 11438621 11580984 - no description, at 420,577 to 420,604 11580984 11723376 - no description, at 420,577 to 420,604 11723376 11438622 - no description, at 420,605 to 420,637 11438622 11580985 - no description, at 420,605 to 420,637 11580985 11723377 - no description, at 420,605 to 420,637 11723377 11438623 - no description, at 420,638 to 420,665 11438623 11580986 - no description, at 420,638 to 420,665 11580986 11723378 - no description, at 420,638 to 420,665 11723378 11438624 - no description, at 420,666 to 420,698 11438624 11580987 - no description, at 420,666 to 420,698 11580987 11723379 - no description, at 420,666 to 420,698 11723379 11438625 - no description, at 420,699 to 420,726 11438625 11580988 - no description, at 420,699 to 420,726 11580988 11723380 - no description, at 420,699 to 420,726 11723380 11438626 - no description, at 420,727 to 420,759 11438626 11580989 - no description, at 420,727 to 420,759 11580989 11723381 - no description, at 420,727 to 420,759 11723381 11438627 - no description, at 420,760 to 420,787 11438627 11580990 - no description, at 420,760 to 420,787 11580990 11723382 - no description, at 420,760 to 420,787 11723382 11438628 - no description, at 420,788 to 420,820 11438628 11580991 - no description, at 420,788 to 420,820 11580991 11723383 - no description, at 420,788 to 420,820 11723383 11438629 - no description, at 420,821 to 420,848 11438629 11580992 - no description, at 420,821 to 420,848 11580992 11723384 - no description, at 420,821 to 420,848 11723384 11438630 - no description, at 420,849 to 420,881 11438630 11580993 - no description, at 420,849 to 420,881 11580993 11723385 - no description, at 420,849 to 420,881 11723385 11438631 - no description, at 420,882 to 420,909 11438631 11580994 - no description, at 420,882 to 420,909 11580994 11723386 - no description, at 420,882 to 420,909 11723386 11438632 - no description, at 420,910 to 420,942 11438632 11580995 - no description, at 420,910 to 420,942 11580995 11723387 - no description, at 420,910 to 420,942 11723387 11438633 - no description, at 420,943 to 420,970 11438633 11580996 - no description, at 420,943 to 420,970 11580996 11723388 - no description, at 420,943 to 420,970 11723388 11438634 - no description, at 420,971 to 421,003 11438634 11580997 - no description, at 420,971 to 421,003 11580997 11723389 - no description, at 420,971 to 421,003 11723389 11438635 - no description, at 421,004 to 421,031 11438635 11580998 - no description, at 421,004 to 421,031 11580998 11723390 - no description, at 421,004 to 421,031 11723390 11438636 - no description, at 421,032 to 421,064 11438636 11580999 - no description, at 421,032 to 421,064 11580999 11723391 - no description, at 421,032 to 421,064 11723391 11438637 - no description, at 421,065 to 421,092 11438637 11581000 - no description, at 421,065 to 421,092 11581000 11723392 - no description, at 421,065 to 421,092 11723392 11438638 - no description, at 421,093 to 421,125 11438638 11581001 - no description, at 421,093 to 421,125 11581001 11723393 - no description, at 421,093 to 421,125 11723393 11438639 - no description, at 421,126 to 421,153 11438639 11581002 - no description, at 421,126 to 421,153 11581002 11723394 - no description, at 421,126 to 421,153 11723394 11438640 - no description, at 421,154 to 421,186 11438640 11581003 - no description, at 421,154 to 421,186 11581003 11723395 - no description, at 421,154 to 421,186 11723395 11438641 - no description, at 421,187 to 421,214 11438641 11581004 - no description, at 421,187 to 421,214 11581004 11723396 - no description, at 421,187 to 421,214 11723396 11438642 - no description, at 421,215 to 421,247 11438642 11581005 - no description, at 421,215 to 421,247 11581005 11723397 - no description, at 421,215 to 421,247 11723397 11438643 - no description, at 421,248 to 421,275 11438643 11581006 - no description, at 421,248 to 421,275 11581006 11723398 - no description, at 421,248 to 421,275 11723398 11438644 - no description, at 421,276 to 421,308 11438644 11581007 - no description, at 421,276 to 421,308 11581007 11723399 - no description, at 421,276 to 421,308 11723399 11438645 - no description, at 421,309 to 421,336 11438645 11581008 - no description, at 421,309 to 421,336 11581008 11723400 - no description, at 421,309 to 421,336 11723400 11438646 - no description, at 421,337 to 421,369 11438646 11581009 - no description, at 421,337 to 421,369 11581009 11723401 - no description, at 421,337 to 421,369 11723401 11438647 - no description, at 421,370 to 421,397 11438647 11581010 - no description, at 421,370 to 421,397 11581010 11723402 - no description, at 421,370 to 421,397 11723402 11438648 - no description, at 421,398 to 421,430 11438648 11581011 - no description, at 421,398 to 421,430 11581011 11723403 - no description, at 421,398 to 421,430 11723403 11438649 - no description, at 421,431 to 421,458 11438649 11581012 - no description, at 421,431 to 421,458 11581012 11723404 - no description, at 421,431 to 421,458 11723404 11438650 - no description, at 421,459 to 421,491 11438650 11581013 - no description, at 421,459 to 421,491 11581013 11723405 - no description, at 421,459 to 421,491 11723405 11438651 - no description, at 421,492 to 421,519 11438651 11581014 - no description, at 421,492 to 421,519 11581014 11723406 - no description, at 421,492 to 421,519 11723406 11438652 - no description, at 421,520 to 421,552 11438652 11581015 - no description, at 421,520 to 421,552 11581015 11723407 - no description, at 421,520 to 421,552 11723407 11438653 - no description, at 421,553 to 421,580 11438653 11581016 - no description, at 421,553 to 421,580 11581016 11723408 - no description, at 421,553 to 421,580 11723408 11438654 - no description, at 421,581 to 421,613 11438654 11581017 - no description, at 421,581 to 421,613 11581017 11723409 - no description, at 421,581 to 421,613 11723409 11438655 - no description, at 421,614 to 421,641 11438655 11581018 - no description, at 421,614 to 421,641 11581018 11723410 - no description, at 421,614 to 421,641 11723410 11438656 - no description, at 421,642 to 421,674 11438656 11581019 - no description, at 421,642 to 421,674 11581019 11723411 - no description, at 421,642 to 421,674 11723411 11438657 - no description, at 421,675 to 421,702 11438657 11581020 - no description, at 421,675 to 421,702 11581020 11723412 - no description, at 421,675 to 421,702 11723412 11438658 - no description, at 421,703 to 421,735 11438658 11581021 - no description, at 421,703 to 421,735 11581021 11723413 - no description, at 421,703 to 421,735 11723413 11438659 - no description, at 421,736 to 421,763 11438659 11581022 - no description, at 421,736 to 421,763 11581022 11723414 - no description, at 421,736 to 421,763 11723414 11438660 - no description, at 421,764 to 421,796 11438660 11581023 - no description, at 421,764 to 421,796 11581023 11723415 - no description, at 421,764 to 421,796 11723415 11438661 - no description, at 421,797 to 421,824 11438661 11581024 - no description, at 421,797 to 421,824 11581024 11723416 - no description, at 421,797 to 421,824 11723416 11438662 - no description, at 421,825 to 421,857 11438662 11581025 - no description, at 421,825 to 421,857 11581025 11723417 - no description, at 421,825 to 421,857 11723417 11438663 - no description, at 421,858 to 421,885 11438663 11581026 - no description, at 421,858 to 421,885 11581026 11723418 - no description, at 421,858 to 421,885 11723418 11438664 - no description, at 421,886 to 421,918 11438664 11581027 - no description, at 421,886 to 421,918 11581027 11723419 - no description, at 421,886 to 421,918 11723419 Position (kb) 420 421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 419.884 kb on - strandat 420.105 kb on + strand, within Rru_A0348at 420.106 kb on - strand, within Rru_A0348at 420.106 kb on - strand, within Rru_A0348at 420.203 kb on + strand, within Rru_A0348at 420.306 kb on - strandat 420.306 kb on - strandat 420.312 kb on + strandat 420.313 kb on - strandat 420.313 kb on - strandat 420.313 kb on - strandat 420.355 kb on + strandat 420.355 kb on + strandat 420.362 kb on + strandat 420.362 kb on + strandat 420.362 kb on + strandat 420.363 kb on - strandat 420.363 kb on - strandat 420.365 kb on + strandat 420.366 kb on - strandat 420.416 kb on + strandat 420.417 kb on - strandat 420.417 kb on - strandat 420.477 kb on + strandat 420.478 kb on - strandat 420.513 kb on + strandat 420.694 kb on + strandat 420.694 kb on + strandat 420.694 kb on + strandat 420.695 kb on - strandat 420.722 kb on - strandat 420.722 kb on - strandat 420.782 kb on + strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.791 kb on - strandat 420.793 kb on + strandat 420.793 kb on + strandat 420.794 kb on - strandat 420.809 kb on + strandat 420.809 kb on + strandat 420.844 kb on - strandat 420.844 kb on - strandat 420.851 kb on + strandat 420.852 kb on - strandat 420.904 kb on + strandat 420.965 kb on + strandat 420.965 kb on + strandat 420.966 kb on - strandat 420.976 kb on + strandat 420.977 kb on - strandat 421.027 kb on - strandat 421.056 kb on + strandat 421.056 kb on + strandat 421.056 kb on + strandat 421.056 kb on + strandat 421.056 kb on + strandat 421.056 kb on + strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.087 kb on + strandat 421.087 kb on + strandat 421.088 kb on - strandat 421.148 kb on + strandat 421.149 kb on - strandat 421.149 kb on - strandat 421.178 kb on + strandat 421.209 kb on + strandat 421.210 kb on - strandat 421.218 kb on + strandat 421.218 kb on + strandat 421.219 kb on - strandat 421.245 kb on + strandat 421.270 kb on + strandat 421.332 kb on - strandat 421.332 kb on - strandat 421.454 kb on - strandat 421.514 kb on + strandat 421.515 kb on - strandat 421.636 kb on + strandat 421.636 kb on + strandat 421.637 kb on - strandat 421.637 kb on - strandat 421.637 kb on - strandat 421.669 kb on - strandat 421.698 kb on - strandat 421.758 kb on + strandat 421.778 kb on + strandat 421.880 kb on + strandat 421.880 kb on + strandat 421.880 kb on + strandat 421.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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419,884 - -2.8
420,105 + Rru_A0348 0.47 +2.3
420,106 - Rru_A0348 0.48 -0.8
420,106 - Rru_A0348 0.48 +0.0
420,203 + Rru_A0348 0.77 +2.2
420,306 - +0.3
420,306 - -1.0
420,312 + -1.6
420,313 - +0.0
420,313 - -1.0
420,313 - -3.3
420,355 + +0.6
420,355 + +1.0
420,362 + -3.0
420,362 + +0.2
420,362 + -1.5
420,363 - +0.1
420,363 - +0.3
420,365 + -1.7
420,366 - -0.8
420,416 + -1.2
420,417 - +1.5
420,417 - -1.9
420,477 + -0.7
420,478 - -0.6
420,513 + +4.4
420,694 + -2.6
420,694 + +1.0
420,694 + -1.3
420,695 - +0.0
420,722 - -1.3
420,722 - +0.6
420,782 + +1.5
420,791 - +0.3
420,791 - -0.8
420,791 - +1.6
420,791 - -0.2
420,791 - -0.2
420,791 - -1.0
420,791 - -0.8
420,793 + -0.2
420,793 + -0.0
420,794 - -2.3
420,809 + +1.0
420,809 + -0.2
420,844 - -3.2
420,844 - -0.8
420,851 + +1.2
420,852 - -0.8
420,904 + +2.0
420,965 + +1.0
420,965 + +0.4
420,966 - -0.5
420,976 + -1.9
420,977 - +0.5
421,027 - -1.5
421,056 + -1.0
421,056 + -0.1
421,056 + -3.8
421,056 + -1.0
421,056 + +0.6
421,056 + +1.4
421,057 - +5.3
421,057 - +2.2
421,057 - +1.4
421,057 - +0.0
421,057 - -2.2
421,057 - -0.5
421,057 - -1.9
421,057 - -0.3
421,057 - -2.1
421,057 - +0.5
421,057 - -1.0
421,057 - -1.0
421,087 + +2.4
421,087 + +0.5
421,088 - -2.0
421,148 + -0.5
421,149 - -4.1
421,149 - -2.7
421,178 + -0.5
421,209 + +0.5
421,210 - +0.5
421,218 + +0.5
421,218 + -1.1
421,219 - +0.6
421,245 + -1.5
421,270 + +1.0
421,332 - -0.5
421,332 - +0.6
421,454 - +1.3
421,514 + +1.0
421,515 - -0.5
421,636 + -1.4
421,636 + -1.8
421,637 - -0.0
421,637 - +0.3
421,637 - +2.0
421,669 - +2.1
421,698 - +0.5
421,758 + -1.6
421,778 + -2.2
421,880 + +2.1
421,880 + -3.4
421,880 + +1.1
421,881 - -1.1

Or see this region's nucleotide sequence