Strain Fitness in Rhodospirillum rubrum S1H around 11580928

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0009 and Rru_A0165 are separated by 287 nucleotidesRru_A0165 and 11438559 are separated by 222 nucleotides11438559 and 11580922 overlap by 29 nucleotides11580922 and 11723314 overlap by 29 nucleotides11723314 and 11438560 are separated by 0 nucleotides11438560 and 11580923 overlap by 32 nucleotides11580923 and 11723315 overlap by 32 nucleotides11723315 and 11438561 are separated by 0 nucleotides11438561 and 11580924 overlap by 29 nucleotides11580924 and 11723316 overlap by 29 nucleotides11723316 and 11438562 are separated by 0 nucleotides11438562 and 11580925 overlap by 32 nucleotides11580925 and 11723317 overlap by 32 nucleotides11723317 and 11438563 are separated by 0 nucleotides11438563 and 11580926 overlap by 29 nucleotides11580926 and 11723318 overlap by 29 nucleotides11723318 and 11438564 are separated by 0 nucleotides11438564 and 11580927 overlap by 32 nucleotides11580927 and 11723319 overlap by 32 nucleotides11723319 and 11438565 are separated by 0 nucleotides11438565 and 11580928 overlap by 29 nucleotides11580928 and 11723320 overlap by 29 nucleotides11723320 and 11438566 are separated by 0 nucleotides11438566 and 11580929 overlap by 32 nucleotides11580929 and 11723321 overlap by 32 nucleotides11723321 and 11438567 are separated by 0 nucleotides11438567 and 11580930 overlap by 29 nucleotides11580930 and 11723322 overlap by 29 nucleotides11723322 and 11438568 are separated by 0 nucleotides11438568 and 11580931 overlap by 32 nucleotides11580931 and 11723323 overlap by 32 nucleotides11723323 and 11438569 are separated by 0 nucleotides11438569 and 11580932 overlap by 29 nucleotides11580932 and 11723324 overlap by 29 nucleotides11723324 and 11438570 are separated by 0 nucleotides11438570 and 11580933 overlap by 32 nucleotides11580933 and 11723325 overlap by 32 nucleotides11723325 and 11438571 are separated by 0 nucleotides11438571 and 11580934 overlap by 29 nucleotides11580934 and 11723326 overlap by 29 nucleotides11723326 and 11438572 are separated by 0 nucleotides11438572 and 11580935 overlap by 32 nucleotides11580935 and 11723327 overlap by 32 nucleotides11723327 and 11438573 are separated by 0 nucleotides11438573 and 11580936 overlap by 29 nucleotides11580936 and 11723328 overlap by 29 nucleotides11723328 and 11438574 are separated by 0 nucleotides11438574 and 11580937 overlap by 33 nucleotides11580937 and 11723329 overlap by 33 nucleotides11723329 and 11438575 are separated by 0 nucleotides11438575 and 11580938 overlap by 29 nucleotides11580938 and 11723330 overlap by 29 nucleotides11723330 and 11438576 are separated by 0 nucleotides11438576 and 11580939 overlap by 32 nucleotides11580939 and 11723331 overlap by 32 nucleotides11723331 and 11438577 are separated by 0 nucleotides11438577 and 11580940 overlap by 29 nucleotides11580940 and 11723332 overlap by 29 nucleotides11723332 and 11438578 are separated by 0 nucleotides11438578 and 11580941 overlap by 32 nucleotides11580941 and 11723333 overlap by 32 nucleotides11723333 and 11438579 are separated by 0 nucleotides11438579 and 11580942 overlap by 29 nucleotides11580942 and 11723334 overlap by 29 nucleotides11723334 and 11438580 are separated by 0 nucleotides11438580 and 11580943 overlap by 32 nucleotides11580943 and 11723335 overlap by 32 nucleotides11723335 and 11438581 are separated by 0 nucleotides11438581 and 11580944 overlap by 29 nucleotides11580944 and 11723336 overlap by 29 nucleotides11723336 and 11438582 are separated by 0 nucleotides11438582 and 11580945 overlap by 32 nucleotides11580945 and 11723337 overlap by 32 nucleotides11723337 and 11438583 are separated by 0 nucleotides11438583 and 11580946 overlap by 29 nucleotides11580946 and 11723338 overlap by 29 nucleotides11723338 and 11438584 are separated by 0 nucleotides11438584 and 11580947 overlap by 32 nucleotides11580947 and 11723339 overlap by 32 nucleotides11723339 and 11438585 are separated by 0 nucleotides11438585 and 11580948 overlap by 29 nucleotides11580948 and 11723340 overlap by 29 nucleotides11723340 and 11438586 are separated by 0 nucleotides11438586 and 11580949 overlap by 32 nucleotides11580949 and 11723341 overlap by 32 nucleotides11723341 and 11438587 are separated by 0 nucleotides11438587 and 11580950 overlap by 29 nucleotides11580950 and 11723342 overlap by 29 nucleotides11723342 and 11438588 are separated by 0 nucleotides11438588 and 11580951 overlap by 32 nucleotides11580951 and 11723343 overlap by 32 nucleotides11723343 and 11438589 are separated by 0 nucleotides11438589 and 11580952 overlap by 29 nucleotides11580952 and 11723344 overlap by 29 nucleotides11723344 and 11438590 are separated by 0 nucleotides11438590 and 11580953 overlap by 32 nucleotides11580953 and 11723345 overlap by 32 nucleotides11723345 and 11438591 are separated by 0 nucleotides11438591 and 11580954 overlap by 29 nucleotides11580954 and 11723346 overlap by 29 nucleotides11723346 and 11438592 are separated by 0 nucleotides11438592 and 11580955 overlap by 32 nucleotides11580955 and 11723347 overlap by 32 nucleotides11723347 and 11438593 are separated by 0 nucleotides11438593 and 11580956 overlap by 29 nucleotides11580956 and 11723348 overlap by 29 nucleotides11723348 and 11438594 are separated by 0 nucleotides11438594 and 11580957 overlap by 32 nucleotides11580957 and 11723349 overlap by 32 nucleotides11723349 and 11438595 are separated by 0 nucleotides11438595 and 11580958 overlap by 29 nucleotides11580958 and 11723350 overlap by 29 nucleotides11723350 and 11438596 are separated by 0 nucleotides11438596 and 11580959 overlap by 32 nucleotides11580959 and 11723351 overlap by 32 nucleotides11723351 and 11438597 are separated by 0 nucleotides11438597 and 11580960 overlap by 29 nucleotides11580960 and 11723352 overlap by 29 nucleotides Rru_AR0009: Rru_AR0009 - tRNA-Met (NCBI), at 197,858 to 197,934 _AR0009 Rru_A0165: Rru_A0165 - hypothetical protein (NCBI), at 198,222 to 198,455 _A0165 11438559 - no description, at 198,678 to 198,706 11438559 11580922 - no description, at 198,678 to 198,706 11580922 11723314 - no description, at 198,678 to 198,706 11723314 11438560 - no description, at 198,707 to 198,738 11438560 11580923 - no description, at 198,707 to 198,738 11580923 11723315 - no description, at 198,707 to 198,738 11723315 11438561 - no description, at 198,739 to 198,767 11438561 11580924 - no description, at 198,739 to 198,767 11580924 11723316 - no description, at 198,739 to 198,767 11723316 11438562 - no description, at 198,768 to 198,799 11438562 11580925 - no description, at 198,768 to 198,799 11580925 11723317 - no description, at 198,768 to 198,799 11723317 11438563 - no description, at 198,800 to 198,828 11438563 11580926 - no description, at 198,800 to 198,828 11580926 11723318 - no description, at 198,800 to 198,828 11723318 11438564 - no description, at 198,829 to 198,860 11438564 11580927 - no description, at 198,829 to 198,860 11580927 11723319 - no description, at 198,829 to 198,860 11723319 11438565 - no description, at 198,861 to 198,889 11438565 11580928 - no description, at 198,861 to 198,889 11580928 11723320 - no description, at 198,861 to 198,889 11723320 11438566 - no description, at 198,890 to 198,921 11438566 11580929 - no description, at 198,890 to 198,921 11580929 11723321 - no description, at 198,890 to 198,921 11723321 11438567 - no description, at 198,922 to 198,950 11438567 11580930 - no description, at 198,922 to 198,950 11580930 11723322 - no description, at 198,922 to 198,950 11723322 11438568 - no description, at 198,951 to 198,982 11438568 11580931 - no description, at 198,951 to 198,982 11580931 11723323 - no description, at 198,951 to 198,982 11723323 11438569 - no description, at 198,983 to 199,011 11438569 11580932 - no description, at 198,983 to 199,011 11580932 11723324 - no description, at 198,983 to 199,011 11723324 11438570 - no description, at 199,012 to 199,043 11438570 11580933 - no description, at 199,012 to 199,043 11580933 11723325 - no description, at 199,012 to 199,043 11723325 11438571 - no description, at 199,044 to 199,072 11438571 11580934 - no description, at 199,044 to 199,072 11580934 11723326 - no description, at 199,044 to 199,072 11723326 11438572 - no description, at 199,073 to 199,104 11438572 11580935 - no description, at 199,073 to 199,104 11580935 11723327 - no description, at 199,073 to 199,104 11723327 11438573 - no description, at 199,105 to 199,133 11438573 11580936 - no description, at 199,105 to 199,133 11580936 11723328 - no description, at 199,105 to 199,133 11723328 11438574 - no description, at 199,134 to 199,166 11438574 11580937 - no description, at 199,134 to 199,166 11580937 11723329 - no description, at 199,134 to 199,166 11723329 11438575 - no description, at 199,167 to 199,195 11438575 11580938 - no description, at 199,167 to 199,195 11580938 11723330 - no description, at 199,167 to 199,195 11723330 11438576 - no description, at 199,196 to 199,227 11438576 11580939 - no description, at 199,196 to 199,227 11580939 11723331 - no description, at 199,196 to 199,227 11723331 11438577 - no description, at 199,228 to 199,256 11438577 11580940 - no description, at 199,228 to 199,256 11580940 11723332 - no description, at 199,228 to 199,256 11723332 11438578 - no description, at 199,257 to 199,288 11438578 11580941 - no description, at 199,257 to 199,288 11580941 11723333 - no description, at 199,257 to 199,288 11723333 11438579 - no description, at 199,289 to 199,317 11438579 11580942 - no description, at 199,289 to 199,317 11580942 11723334 - no description, at 199,289 to 199,317 11723334 11438580 - no description, at 199,318 to 199,349 11438580 11580943 - no description, at 199,318 to 199,349 11580943 11723335 - no description, at 199,318 to 199,349 11723335 11438581 - no description, at 199,350 to 199,378 11438581 11580944 - no description, at 199,350 to 199,378 11580944 11723336 - no description, at 199,350 to 199,378 11723336 11438582 - no description, at 199,379 to 199,410 11438582 11580945 - no description, at 199,379 to 199,410 11580945 11723337 - no description, at 199,379 to 199,410 11723337 11438583 - no description, at 199,411 to 199,439 11438583 11580946 - no description, at 199,411 to 199,439 11580946 11723338 - no description, at 199,411 to 199,439 11723338 11438584 - no description, at 199,440 to 199,471 11438584 11580947 - no description, at 199,440 to 199,471 11580947 11723339 - no description, at 199,440 to 199,471 11723339 11438585 - no description, at 199,472 to 199,500 11438585 11580948 - no description, at 199,472 to 199,500 11580948 11723340 - no description, at 199,472 to 199,500 11723340 11438586 - no description, at 199,501 to 199,532 11438586 11580949 - no description, at 199,501 to 199,532 11580949 11723341 - no description, at 199,501 to 199,532 11723341 11438587 - no description, at 199,533 to 199,561 11438587 11580950 - no description, at 199,533 to 199,561 11580950 11723342 - no description, at 199,533 to 199,561 11723342 11438588 - no description, at 199,562 to 199,593 11438588 11580951 - no description, at 199,562 to 199,593 11580951 11723343 - no description, at 199,562 to 199,593 11723343 11438589 - no description, at 199,594 to 199,622 11438589 11580952 - no description, at 199,594 to 199,622 11580952 11723344 - no description, at 199,594 to 199,622 11723344 11438590 - no description, at 199,623 to 199,654 11438590 11580953 - no description, at 199,623 to 199,654 11580953 11723345 - no description, at 199,623 to 199,654 11723345 11438591 - no description, at 199,655 to 199,683 11438591 11580954 - no description, at 199,655 to 199,683 11580954 11723346 - no description, at 199,655 to 199,683 11723346 11438592 - no description, at 199,684 to 199,715 11438592 11580955 - no description, at 199,684 to 199,715 11580955 11723347 - no description, at 199,684 to 199,715 11723347 11438593 - no description, at 199,716 to 199,744 11438593 11580956 - no description, at 199,716 to 199,744 11580956 11723348 - no description, at 199,716 to 199,744 11723348 11438594 - no description, at 199,745 to 199,776 11438594 11580957 - no description, at 199,745 to 199,776 11580957 11723349 - no description, at 199,745 to 199,776 11723349 11438595 - no description, at 199,777 to 199,805 11438595 11580958 - no description, at 199,777 to 199,805 11580958 11723350 - no description, at 199,777 to 199,805 11723350 11438596 - no description, at 199,806 to 199,837 11438596 11580959 - no description, at 199,806 to 199,837 11580959 11723351 - no description, at 199,806 to 199,837 11723351 11438597 - no description, at 199,838 to 199,866 11438597 11580960 - no description, at 199,838 to 199,866 11580960 11723352 - no description, at 199,838 to 199,866 11723352 Position (kb) 198 199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 198.071 kb on + strandat 198.187 kb on + strandat 198.187 kb on + strandat 198.188 kb on - strandat 198.188 kb on - strandat 198.188 kb on - strandat 198.188 kb on - strandat 198.495 kb on + strandat 198.495 kb on + strandat 198.496 kb on - strandat 198.548 kb on + strandat 198.549 kb on - strandat 198.549 kb on - strandat 198.552 kb on - strandat 198.568 kb on + strandat 198.569 kb on - strandat 198.571 kb on + strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.587 kb on + strandat 198.588 kb on - strandat 198.588 kb on - strandat 198.607 kb on + strandat 198.608 kb on - strandat 198.610 kb on + strandat 198.611 kb on - strandat 198.859 kb on + strandat 198.965 kb on + strandat 198.965 kb on + strandat 198.965 kb on + strandat 198.966 kb on - strandat 198.966 kb on - strandat 199.020 kb on + strandat 199.020 kb on + strandat 199.021 kb on - strandat 199.081 kb on - strandat 199.081 kb on - strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.331 kb on + strandat 199.332 kb on - strandat 199.332 kb on - strandat 199.332 kb on - strandat 199.444 kb on + strandat 199.528 kb on + strandat 199.528 kb on + strandat 199.528 kb on + strandat 199.574 kb on + strandat 199.575 kb on - strandat 199.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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198,071 + +2.8
198,187 + -3.0
198,187 + -0.8
198,188 - -0.6
198,188 - -0.6
198,188 - +0.3
198,188 - +0.0
198,495 + +0.0
198,495 + +0.0
198,496 - +0.6
198,548 + -1.4
198,549 - +0.4
198,549 - -1.9
198,552 - -1.4
198,568 + +0.0
198,569 - -1.9
198,571 + +0.1
198,572 - -1.2
198,572 - +1.2
198,587 + +0.1
198,588 - +1.1
198,588 - +0.4
198,607 + -1.4
198,608 - +0.2
198,610 + -2.5
198,611 - +1.8
198,859 + +0.1
198,965 + +2.0
198,965 + -2.5
198,965 + -2.4
198,966 - -0.3
198,966 - -0.6
199,020 + -2.9
199,020 + -0.2
199,021 - -0.6
199,081 - +0.2
199,081 - -0.5
199,331 + +2.0
199,331 + -1.4
199,331 + +1.7
199,331 + +2.8
199,331 + -1.4
199,332 - -1.9
199,332 - -2.2
199,332 - -2.2
199,444 + -4.5
199,528 + -2.1
199,528 + -2.0
199,528 + +0.5
199,574 + -0.0
199,575 - -1.6
199,888 + -1.9

Or see this region's nucleotide sequence