Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3802

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3801 and Rru_A3802 are separated by 142 nucleotides Rru_A3801: Rru_A3801 - Enoyl-CoA hydratase/isomerase (NCBI), at 4,351,096 to 4,351,872 _A3801 Rru_A3802: Rru_A3802 - Ribosomal protein S20p (NCBI), at 4,352,015 to 4,352,281 _A3802 Position (kb) 4352 4353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4351.070 kb on + strandat 4351.070 kb on + strandat 4351.070 kb on + strandat 4351.070 kb on + strandat 4351.071 kb on - strandat 4351.318 kb on + strand, within Rru_A3801at 4351.319 kb on - strand, within Rru_A3801at 4351.319 kb on - strand, within Rru_A3801at 4351.320 kb on + strand, within Rru_A3801at 4351.928 kb on + strandat 4351.930 kb on + strandat 4352.280 kb on - strandat 4352.280 kb on - strandat 4352.430 kb on + strandat 4352.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,351,070 + -0.7
4,351,070 + -2.8
4,351,070 + +0.8
4,351,070 + -1.3
4,351,071 - -0.2
4,351,318 + Rru_A3801 0.29 +0.1
4,351,319 - Rru_A3801 0.29 +1.1
4,351,319 - Rru_A3801 0.29 -0.7
4,351,320 + Rru_A3801 0.29 +0.7
4,351,928 + -0.2
4,351,930 + +2.1
4,352,280 - +4.5
4,352,280 - +0.8
4,352,430 + -0.7
4,352,702 + -1.6

Or see this region's nucleotide sequence