Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3796

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3794 and Rru_A3795 are separated by 134 nucleotidesRru_A3795 and Rru_A3796 overlap by 4 nucleotidesRru_A3796 and Rru_A3797 are separated by 331 nucleotides Rru_A3794: Rru_A3794 - Cysteine synthase (NCBI), at 4,344,000 to 4,345,019 _A3794 Rru_A3795: Rru_A3795 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 4,345,154 to 4,345,609 _A3795 Rru_A3796: Rru_A3796 - DNA/pantothenate metabolism flavoprotein (NCBI), at 4,345,606 to 4,346,880 _A3796 Rru_A3797: Rru_A3797 - 2-polyprenylphenol 6-hydroxylase (NCBI), at 4,347,212 to 4,348,771 _A3797 Position (kb) 4345 4346 4347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4344.922 kb on + strandat 4344.923 kb on - strandat 4345.061 kb on - strandat 4345.121 kb on + strandat 4345.122 kb on - strandat 4345.551 kb on + strand, within Rru_A3795at 4345.551 kb on + strand, within Rru_A3795at 4346.830 kb on - strandat 4346.884 kb on - strandat 4346.970 kb on - strandat 4346.981 kb on - strandat 4347.000 kb on + strandat 4347.002 kb on + strandat 4347.003 kb on - strandat 4347.213 kb on + strandat 4347.214 kb on - strandat 4347.214 kb on - strandat 4347.214 kb on - strandat 4347.236 kb on + strandat 4347.237 kb on - strandat 4347.237 kb on - strandat 4347.350 kb on - strandat 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.505 kb on + strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.506 kb on - strand, within Rru_A3797at 4347.808 kb on - strand, within Rru_A3797

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,344,922 + -0.9
4,344,923 - -0.5
4,345,061 - -3.1
4,345,121 + +3.0
4,345,122 - +1.7
4,345,551 + Rru_A3795 0.87 +1.1
4,345,551 + Rru_A3795 0.87 -1.8
4,346,830 - -1.5
4,346,884 - +1.1
4,346,970 - +0.3
4,346,981 - -2.5
4,347,000 + -0.9
4,347,002 + -1.8
4,347,003 - +2.1
4,347,213 + -0.9
4,347,214 - -0.2
4,347,214 - -1.7
4,347,214 - -1.2
4,347,236 + -4.5
4,347,237 - -0.5
4,347,237 - -4.0
4,347,350 - -2.6
4,347,505 + Rru_A3797 0.19 +1.1
4,347,505 + Rru_A3797 0.19 +1.1
4,347,505 + Rru_A3797 0.19 +0.5
4,347,505 + Rru_A3797 0.19 -2.5
4,347,505 + Rru_A3797 0.19 -1.9
4,347,505 + Rru_A3797 0.19 +0.1
4,347,505 + Rru_A3797 0.19 -4.6
4,347,505 + Rru_A3797 0.19 +0.5
4,347,506 - Rru_A3797 0.19 -3.0
4,347,506 - Rru_A3797 0.19 -0.7
4,347,506 - Rru_A3797 0.19 -1.2
4,347,506 - Rru_A3797 0.19 -0.7
4,347,808 - Rru_A3797 0.38 -2.1

Or see this region's nucleotide sequence