Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3794 and Rru_A3795 are separated by 134 nucleotides Rru_A3795 and Rru_A3796 overlap by 4 nucleotides Rru_A3796 and Rru_A3797 are separated by 331 nucleotides
Rru_A3794: Rru_A3794 - Cysteine synthase (NCBI), at 4,344,000 to 4,345,019
_A3794
Rru_A3795: Rru_A3795 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 4,345,154 to 4,345,609
_A3795
Rru_A3796: Rru_A3796 - DNA/pantothenate metabolism flavoprotein (NCBI), at 4,345,606 to 4,346,880
_A3796
Rru_A3797: Rru_A3797 - 2-polyprenylphenol 6-hydroxylase (NCBI), at 4,347,212 to 4,348,771
_A3797
Position (kb)
4345
4346
4347 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4344.922 kb on + strand at 4344.923 kb on - strand at 4345.061 kb on - strand at 4345.121 kb on + strand at 4345.122 kb on - strand at 4345.551 kb on + strand, within Rru_A3795 at 4345.551 kb on + strand, within Rru_A3795 at 4346.830 kb on - strand at 4346.884 kb on - strand at 4346.970 kb on - strand at 4346.981 kb on - strand at 4347.000 kb on + strand at 4347.002 kb on + strand at 4347.003 kb on - strand at 4347.213 kb on + strand at 4347.214 kb on - strand at 4347.214 kb on - strand at 4347.214 kb on - strand at 4347.236 kb on + strand at 4347.237 kb on - strand at 4347.237 kb on - strand at 4347.350 kb on - strand at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.505 kb on + strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.506 kb on - strand, within Rru_A3797 at 4347.808 kb on - strand, within Rru_A3797
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,344,922 + -0.9 4,344,923 - -0.5 4,345,061 - -3.1 4,345,121 + +3.0 4,345,122 - +1.7 4,345,551 + Rru_A3795 0.87 +1.1 4,345,551 + Rru_A3795 0.87 -1.8 4,346,830 - -1.5 4,346,884 - +1.1 4,346,970 - +0.3 4,346,981 - -2.5 4,347,000 + -0.9 4,347,002 + -1.8 4,347,003 - +2.1 4,347,213 + -0.9 4,347,214 - -0.2 4,347,214 - -1.7 4,347,214 - -1.2 4,347,236 + -4.5 4,347,237 - -0.5 4,347,237 - -4.0 4,347,350 - -2.6 4,347,505 + Rru_A3797 0.19 +1.1 4,347,505 + Rru_A3797 0.19 +1.1 4,347,505 + Rru_A3797 0.19 +0.5 4,347,505 + Rru_A3797 0.19 -2.5 4,347,505 + Rru_A3797 0.19 -1.9 4,347,505 + Rru_A3797 0.19 +0.1 4,347,505 + Rru_A3797 0.19 -4.6 4,347,505 + Rru_A3797 0.19 +0.5 4,347,506 - Rru_A3797 0.19 -3.0 4,347,506 - Rru_A3797 0.19 -0.7 4,347,506 - Rru_A3797 0.19 -1.2 4,347,506 - Rru_A3797 0.19 -0.7 4,347,808 - Rru_A3797 0.38 -2.1
Or see this region's nucleotide sequence