Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3792 and Rru_A3793 overlap by 11 nucleotides Rru_A3793 and Rru_A3794 are separated by 155 nucleotides Rru_A3794 and Rru_A3795 are separated by 134 nucleotides Rru_A3795 and Rru_A3796 overlap by 4 nucleotides
Rru_A3792: Rru_A3792 - hypothetical protein (NCBI), at 4,342,551 to 4,343,039
_A3792
Rru_A3793: Rru_A3793 - molybdopterin biosynthesis protein (NCBI), at 4,343,029 to 4,343,844
_A3793
Rru_A3794: Rru_A3794 - Cysteine synthase (NCBI), at 4,344,000 to 4,345,019
_A3794
Rru_A3795: Rru_A3795 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 4,345,154 to 4,345,609
_A3795
Rru_A3796: Rru_A3796 - DNA/pantothenate metabolism flavoprotein (NCBI), at 4,345,606 to 4,346,880
_A3796
Position (kb) 4343
4344
4345
4346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4344.922 kb on + strand at 4344.923 kb on - strand at 4345.061 kb on - strand at 4345.121 kb on + strand at 4345.122 kb on - strand at 4345.551 kb on + strand, within Rru_A3795 at 4345.551 kb on + strand, within Rru_A3795
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,344,922 + -0.9 4,344,923 - -0.5 4,345,061 - -3.1 4,345,121 + +3.0 4,345,122 - +1.7 4,345,551 + Rru_A3795 0.87 +1.1 4,345,551 + Rru_A3795 0.87 -1.8
Or see this region's nucleotide sequence