Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3786

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3785 and Rru_A3786 are separated by 50 nucleotidesRru_A3786 and Rru_A3787 are separated by 91 nucleotides Rru_A3785: Rru_A3785 - 3' exoribonuclease (NCBI), at 4,334,832 to 4,336,958 _A3785 Rru_A3786: Rru_A3786 - Glycerophosphodiester phosphodiesterase (NCBI), at 4,337,009 to 4,337,884 _A3786 Rru_A3787: Rru_A3787 - 2-nitropropane dioxygenase, NPD (NCBI), at 4,337,976 to 4,339,373 _A3787 Position (kb) 4337 4338Strain fitness (log2 ratio) -1 0 1at 4336.956 kb on + strandat 4336.956 kb on + strandat 4336.957 kb on - strandat 4336.957 kb on - strandat 4337.257 kb on + strand, within Rru_A3786

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,336,956 + -1.1
4,336,956 + -1.1
4,336,957 - +0.3
4,336,957 - +1.7
4,337,257 + Rru_A3786 0.28 -1.0

Or see this region's nucleotide sequence