Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3785

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3783 and Rru_A3784 are separated by 46 nucleotidesRru_A3784 and Rru_A3785 are separated by 277 nucleotidesRru_A3785 and Rru_A3786 are separated by 50 nucleotides Rru_A3783: Rru_A3783 - tRNA pseudouridine synthase B (NCBI), at 4,333,312 to 4,334,238 _A3783 Rru_A3784: Rru_A3784 - Ribosomal protein S15 (NCBI), at 4,334,285 to 4,334,554 _A3784 Rru_A3785: Rru_A3785 - 3' exoribonuclease (NCBI), at 4,334,832 to 4,336,958 _A3785 Rru_A3786: Rru_A3786 - Glycerophosphodiester phosphodiesterase (NCBI), at 4,337,009 to 4,337,884 _A3786 Position (kb) 4334 4335 4336 4337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.847 kb on - strand, within Rru_A3783at 4333.847 kb on - strand, within Rru_A3783at 4333.848 kb on + strand, within Rru_A3783at 4333.848 kb on + strand, within Rru_A3783at 4333.849 kb on - strand, within Rru_A3783at 4333.849 kb on - strand, within Rru_A3783at 4333.967 kb on + strand, within Rru_A3783at 4334.753 kb on - strandat 4334.753 kb on - strandat 4334.753 kb on - strandat 4334.809 kb on + strandat 4336.956 kb on + strandat 4336.956 kb on + strandat 4336.957 kb on - strandat 4336.957 kb on - strandat 4337.257 kb on + strand, within Rru_A3786

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,333,846 + Rru_A3783 0.58 +0.3
4,333,846 + Rru_A3783 0.58 +0.5
4,333,846 + Rru_A3783 0.58 +1.6
4,333,846 + Rru_A3783 0.58 -0.2
4,333,847 - Rru_A3783 0.58 +1.2
4,333,847 - Rru_A3783 0.58 +2.1
4,333,848 + Rru_A3783 0.58 +2.1
4,333,848 + Rru_A3783 0.58 -1.5
4,333,849 - Rru_A3783 0.58 +1.3
4,333,849 - Rru_A3783 0.58 +0.9
4,333,967 + Rru_A3783 0.71 -0.4
4,334,753 - +2.1
4,334,753 - +0.5
4,334,753 - +0.1
4,334,809 + -3.5
4,336,956 + -1.1
4,336,956 + -1.1
4,336,957 - +0.3
4,336,957 - +1.7
4,337,257 + Rru_A3786 0.28 -1.0

Or see this region's nucleotide sequence