Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3783 and Rru_A3784 are separated by 46 nucleotides Rru_A3784 and Rru_A3785 are separated by 277 nucleotides Rru_A3785 and Rru_A3786 are separated by 50 nucleotides
Rru_A3783: Rru_A3783 - tRNA pseudouridine synthase B (NCBI), at 4,333,312 to 4,334,238
_A3783
Rru_A3784: Rru_A3784 - Ribosomal protein S15 (NCBI), at 4,334,285 to 4,334,554
_A3784
Rru_A3785: Rru_A3785 - 3' exoribonuclease (NCBI), at 4,334,832 to 4,336,958
_A3785
Rru_A3786: Rru_A3786 - Glycerophosphodiester phosphodiesterase (NCBI), at 4,337,009 to 4,337,884
_A3786
Position (kb)
4334
4335
4336
4337 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4333.846 kb on + strand, within Rru_A3783 at 4333.846 kb on + strand, within Rru_A3783 at 4333.846 kb on + strand, within Rru_A3783 at 4333.846 kb on + strand, within Rru_A3783 at 4333.847 kb on - strand, within Rru_A3783 at 4333.847 kb on - strand, within Rru_A3783 at 4333.848 kb on + strand, within Rru_A3783 at 4333.848 kb on + strand, within Rru_A3783 at 4333.849 kb on - strand, within Rru_A3783 at 4333.849 kb on - strand, within Rru_A3783 at 4333.967 kb on + strand, within Rru_A3783 at 4334.753 kb on - strand at 4334.753 kb on - strand at 4334.753 kb on - strand at 4334.809 kb on + strand at 4336.956 kb on + strand at 4336.956 kb on + strand at 4336.957 kb on - strand at 4336.957 kb on - strand at 4337.257 kb on + strand, within Rru_A3786
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,333,846 + Rru_A3783 0.58 +0.3 4,333,846 + Rru_A3783 0.58 +0.5 4,333,846 + Rru_A3783 0.58 +1.6 4,333,846 + Rru_A3783 0.58 -0.2 4,333,847 - Rru_A3783 0.58 +1.2 4,333,847 - Rru_A3783 0.58 +2.1 4,333,848 + Rru_A3783 0.58 +2.1 4,333,848 + Rru_A3783 0.58 -1.5 4,333,849 - Rru_A3783 0.58 +1.3 4,333,849 - Rru_A3783 0.58 +0.9 4,333,967 + Rru_A3783 0.71 -0.4 4,334,753 - +2.1 4,334,753 - +0.5 4,334,753 - +0.1 4,334,809 + -3.5 4,336,956 + -1.1 4,336,956 + -1.1 4,336,957 - +0.3 4,336,957 - +1.7 4,337,257 + Rru_A3786 0.28 -1.0
Or see this region's nucleotide sequence