Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3779 and Rru_A3780 overlap by 8 nucleotides Rru_A3780 and Rru_A3781 are separated by 172 nucleotides Rru_A3781 and Rru_A3782 are separated by 244 nucleotides Rru_A3782 and Rru_A3783 overlap by 4 nucleotides
Rru_A3779: Rru_A3779 - NusA antitermination factor (NCBI), at 4,327,448 to 4,328,998
_A3779
Rru_A3780: Rru_A3780 - Protein of unknown function DUF448 (NCBI), at 4,328,991 to 4,329,782
_A3780
Rru_A3781: Rru_A3781 - Initiation factor 2 (NCBI), at 4,329,955 to 4,332,576
_A3781
Rru_A3782: Rru_A3782 - Ribosome-binding factor A (NCBI), at 4,332,821 to 4,333,315
_A3782
Rru_A3783: Rru_A3783 - tRNA pseudouridine synthase B (NCBI), at 4,333,312 to 4,334,238
_A3783
Position (kb) 4329
4330
4331
4332
4333 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4329.899 kb on + strand at 4332.574 kb on + strand at 4332.575 kb on - strand at 4332.799 kb on + strand at 4332.800 kb on - strand at 4333.154 kb on + strand, within Rru_A3782 at 4333.154 kb on + strand, within Rru_A3782 at 4333.154 kb on + strand, within Rru_A3782 at 4333.155 kb on - strand, within Rru_A3782 at 4333.155 kb on - strand, within Rru_A3782 at 4333.510 kb on + strand, within Rru_A3783 at 4333.510 kb on + strand, within Rru_A3783 at 4333.510 kb on + strand, within Rru_A3783 at 4333.511 kb on - strand, within Rru_A3783 at 4333.511 kb on - strand, within Rru_A3783 at 4333.511 kb on - strand, within Rru_A3783 at 4333.511 kb on - strand, within Rru_A3783 at 4333.511 kb on - strand, within Rru_A3783
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,329,899 + -1.1 4,332,574 + +0.1 4,332,575 - +0.1 4,332,799 + +1.2 4,332,800 - +0.1 4,333,154 + Rru_A3782 0.67 -2.4 4,333,154 + Rru_A3782 0.67 +0.0 4,333,154 + Rru_A3782 0.67 +0.5 4,333,155 - Rru_A3782 0.67 +4.8 4,333,155 - Rru_A3782 0.67 -1.7 4,333,510 + Rru_A3783 0.21 +6.0 4,333,510 + Rru_A3783 0.21 -2.3 4,333,510 + Rru_A3783 0.21 -0.2 4,333,511 - Rru_A3783 0.21 -0.5 4,333,511 - Rru_A3783 0.21 -2.2 4,333,511 - Rru_A3783 0.21 +1.3 4,333,511 - Rru_A3783 0.21 +0.1 4,333,511 - Rru_A3783 0.21 +5.4
Or see this region's nucleotide sequence