Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3780

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3779 and Rru_A3780 overlap by 8 nucleotidesRru_A3780 and Rru_A3781 are separated by 172 nucleotides Rru_A3779: Rru_A3779 - NusA antitermination factor (NCBI), at 4,327,448 to 4,328,998 _A3779 Rru_A3780: Rru_A3780 - Protein of unknown function DUF448 (NCBI), at 4,328,991 to 4,329,782 _A3780 Rru_A3781: Rru_A3781 - Initiation factor 2 (NCBI), at 4,329,955 to 4,332,576 _A3781 Position (kb) 4328 4329 4330Strain fitness (log2 ratio) -1 0 1at 4329.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,329,899 + -1.1

Or see this region's nucleotide sequence