Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3772 and Rru_A3773 overlap by 4 nucleotides Rru_A3773 and Rru_A3774 are separated by 1 nucleotides Rru_A3774 and Rru_A3775 are separated by 158 nucleotides Rru_A3775 and Rru_A3776 are separated by 147 nucleotides
Rru_A3772: Rru_A3772 - Protein of unknown function UPF0054 (NCBI), at 4,320,648 to 4,321,250
_A3772
Rru_A3773: Rru_A3773 - CBS domain protein (NCBI), at 4,321,247 to 4,322,203
_A3773
Rru_A3774: Rru_A3774 - Apolipoprotein N-acyltransferase (NCBI), at 4,322,205 to 4,323,800
_A3774
Rru_A3775: Rru_A3775 - Transcriptional Regulator, XRE family (NCBI), at 4,323,959 to 4,324,591
_A3775
Rru_A3776: Rru_A3776 - Methionine adenosyltransferase (NCBI), at 4,324,739 to 4,325,908
_A3776
Position (kb)
4322
4323
4324 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4321.492 kb on + strand, within Rru_A3773 at 4321.492 kb on + strand, within Rru_A3773 at 4321.492 kb on + strand, within Rru_A3773 at 4321.802 kb on + strand, within Rru_A3773 at 4321.802 kb on + strand, within Rru_A3773 at 4323.766 kb on + strand at 4323.798 kb on + strand at 4323.841 kb on + strand at 4323.841 kb on + strand at 4323.842 kb on - strand at 4323.842 kb on - strand at 4323.843 kb on + strand at 4323.843 kb on + strand at 4323.843 kb on + strand at 4323.843 kb on + strand at 4323.844 kb on - strand at 4323.844 kb on - strand at 4324.349 kb on + strand, within Rru_A3775 at 4324.349 kb on + strand, within Rru_A3775 at 4324.349 kb on + strand, within Rru_A3775 at 4324.350 kb on - strand, within Rru_A3775 at 4324.441 kb on + strand, within Rru_A3775 at 4324.441 kb on + strand, within Rru_A3775 at 4324.441 kb on + strand, within Rru_A3775 at 4324.481 kb on + strand, within Rru_A3775 at 4324.484 kb on + strand, within Rru_A3775 at 4324.484 kb on + strand, within Rru_A3775 at 4324.589 kb on + strand at 4324.589 kb on + strand at 4324.590 kb on - strand at 4324.590 kb on - strand at 4324.590 kb on - strand at 4324.590 kb on - strand at 4324.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,321,492 + Rru_A3773 0.26 -0.9 4,321,492 + Rru_A3773 0.26 +0.1 4,321,492 + Rru_A3773 0.26 -1.1 4,321,802 + Rru_A3773 0.58 -3.1 4,321,802 + Rru_A3773 0.58 +1.1 4,323,766 + +2.6 4,323,798 + -1.2 4,323,841 + -0.5 4,323,841 + -2.2 4,323,842 - +2.1 4,323,842 - -0.4 4,323,843 + -0.2 4,323,843 + +0.8 4,323,843 + -3.2 4,323,843 + -1.5 4,323,844 - +0.2 4,323,844 - -0.5 4,324,349 + Rru_A3775 0.62 +2.9 4,324,349 + Rru_A3775 0.62 -2.9 4,324,349 + Rru_A3775 0.62 +0.5 4,324,350 - Rru_A3775 0.62 +0.5 4,324,441 + Rru_A3775 0.76 -3.2 4,324,441 + Rru_A3775 0.76 -1.8 4,324,441 + Rru_A3775 0.76 -2.5 4,324,481 + Rru_A3775 0.82 -0.4 4,324,484 + Rru_A3775 0.83 -2.1 4,324,484 + Rru_A3775 0.83 -2.0 4,324,589 + +2.1 4,324,589 + -0.9 4,324,590 - +2.8 4,324,590 - -3.3 4,324,590 - -1.1 4,324,590 - +0.3 4,324,590 - -0.0
Or see this region's nucleotide sequence