Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3766 and Rru_A3767 are separated by 121 nucleotides Rru_A3767 and Rru_A3768 are separated by 61 nucleotides Rru_A3768 and Rru_A3769 overlap by 4 nucleotides
Rru_A3766: Rru_A3766 - Transcriptional Regulator, MucR family (NCBI), at 4,315,439 to 4,315,861
_A3766
Rru_A3767: Rru_A3767 - Ferric uptake regulator (FUR) family (NCBI), at 4,315,983 to 4,316,405
_A3767
Rru_A3768: Rru_A3768 - hypothetical protein (NCBI), at 4,316,467 to 4,317,267
_A3768
Rru_A3769: Rru_A3769 - Phospholipid/glycerol acyltransferase (NCBI), at 4,317,264 to 4,318,223
_A3769
Position (kb)
4316
4317
4318 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 4315.556 kb on + strand, within Rru_A3766 at 4315.556 kb on + strand, within Rru_A3766 at 4315.557 kb on - strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.649 kb on + strand, within Rru_A3766 at 4315.650 kb on - strand, within Rru_A3766 at 4315.650 kb on - strand, within Rru_A3766 at 4315.712 kb on + strand, within Rru_A3766 at 4315.869 kb on + strand at 4315.869 kb on + strand at 4315.870 kb on - strand at 4315.878 kb on + strand at 4315.879 kb on - strand at 4315.942 kb on + strand at 4315.942 kb on + strand at 4315.942 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4315.945 kb on + strand at 4318.242 kb on + strand at 4318.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,315,556 + Rru_A3766 0.28 +1.5 4,315,556 + Rru_A3766 0.28 -1.1 4,315,557 - Rru_A3766 0.28 +1.1 4,315,649 + Rru_A3766 0.50 -0.5 4,315,649 + Rru_A3766 0.50 +0.8 4,315,649 + Rru_A3766 0.50 +2.1 4,315,649 + Rru_A3766 0.50 -0.5 4,315,649 + Rru_A3766 0.50 +6.9 4,315,649 + Rru_A3766 0.50 +1.1 4,315,650 - Rru_A3766 0.50 -0.7 4,315,650 - Rru_A3766 0.50 -1.4 4,315,712 + Rru_A3766 0.65 +2.0 4,315,869 + +1.5 4,315,869 + -0.7 4,315,870 - -1.6 4,315,878 + -2.3 4,315,879 - -0.9 4,315,942 + +1.6 4,315,942 + +0.8 4,315,942 + -0.8 4,315,945 + +0.2 4,315,945 + +2.2 4,315,945 + +0.2 4,315,945 + +0.2 4,315,945 + -0.2 4,315,945 + +0.3 4,315,945 + +1.4 4,315,945 + -0.1 4,315,945 + -0.2 4,318,242 + +1.6 4,318,243 - -1.5
Or see this region's nucleotide sequence