Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3767

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3764 and Rru_A3765 are separated by 23 nucleotidesRru_A3765 and Rru_A3766 are separated by 94 nucleotidesRru_A3766 and Rru_A3767 are separated by 121 nucleotidesRru_A3767 and Rru_A3768 are separated by 61 nucleotidesRru_A3768 and Rru_A3769 overlap by 4 nucleotides Rru_A3764: Rru_A3764 - GCN5-related N-acetyltransferase (NCBI), at 4,314,554 to 4,315,063 _A3764 Rru_A3765: Rru_A3765 - hypothetical protein (NCBI), at 4,315,087 to 4,315,344 _A3765 Rru_A3766: Rru_A3766 - Transcriptional Regulator, MucR family (NCBI), at 4,315,439 to 4,315,861 _A3766 Rru_A3767: Rru_A3767 - Ferric uptake regulator (FUR) family (NCBI), at 4,315,983 to 4,316,405 _A3767 Rru_A3768: Rru_A3768 - hypothetical protein (NCBI), at 4,316,467 to 4,317,267 _A3768 Rru_A3769: Rru_A3769 - Phospholipid/glycerol acyltransferase (NCBI), at 4,317,264 to 4,318,223 _A3769 Position (kb) 4315 4316 4317Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4315.032 kb on + strandat 4315.033 kb on - strandat 4315.033 kb on - strandat 4315.062 kb on - strandat 4315.363 kb on - strandat 4315.556 kb on + strand, within Rru_A3766at 4315.556 kb on + strand, within Rru_A3766at 4315.557 kb on - strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.649 kb on + strand, within Rru_A3766at 4315.650 kb on - strand, within Rru_A3766at 4315.650 kb on - strand, within Rru_A3766at 4315.712 kb on + strand, within Rru_A3766at 4315.869 kb on + strandat 4315.869 kb on + strandat 4315.870 kb on - strandat 4315.878 kb on + strandat 4315.879 kb on - strandat 4315.942 kb on + strandat 4315.942 kb on + strandat 4315.942 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strandat 4315.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,315,032 + -1.1
4,315,033 - +0.1
4,315,033 - +0.1
4,315,062 - +1.3
4,315,363 - -1.9
4,315,556 + Rru_A3766 0.28 +1.5
4,315,556 + Rru_A3766 0.28 -1.1
4,315,557 - Rru_A3766 0.28 +1.1
4,315,649 + Rru_A3766 0.50 -0.5
4,315,649 + Rru_A3766 0.50 +0.8
4,315,649 + Rru_A3766 0.50 +2.1
4,315,649 + Rru_A3766 0.50 -0.5
4,315,649 + Rru_A3766 0.50 +6.9
4,315,649 + Rru_A3766 0.50 +1.1
4,315,650 - Rru_A3766 0.50 -0.7
4,315,650 - Rru_A3766 0.50 -1.4
4,315,712 + Rru_A3766 0.65 +2.0
4,315,869 + +1.5
4,315,869 + -0.7
4,315,870 - -1.6
4,315,878 + -2.3
4,315,879 - -0.9
4,315,942 + +1.6
4,315,942 + +0.8
4,315,942 + -0.8
4,315,945 + +0.2
4,315,945 + +2.2
4,315,945 + +0.2
4,315,945 + +0.2
4,315,945 + -0.2
4,315,945 + +0.3
4,315,945 + +1.4
4,315,945 + -0.1
4,315,945 + -0.2

Or see this region's nucleotide sequence