Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3761 and Rru_A3762 are separated by 135 nucleotides Rru_A3762 and Rru_A3763 overlap by 4 nucleotides Rru_A3763 and Rru_A3764 overlap by 4 nucleotides Rru_A3764 and Rru_A3765 are separated by 23 nucleotides Rru_A3765 and Rru_A3766 are separated by 94 nucleotides
Rru_A3761: Rru_A3761 - hypothetical protein (NCBI), at 4,311,862 to 4,313,154
_A3761
Rru_A3762: Rru_A3762 - Peptidase M15D, vanX D-ala-D-ala dipeptidase (NCBI), at 4,313,290 to 4,313,862
_A3762
Rru_A3763: Rru_A3763 - Peptidase M22, glycoprotease (NCBI), at 4,313,859 to 4,314,557
_A3763
Rru_A3764: Rru_A3764 - GCN5-related N-acetyltransferase (NCBI), at 4,314,554 to 4,315,063
_A3764
Rru_A3765: Rru_A3765 - hypothetical protein (NCBI), at 4,315,087 to 4,315,344
_A3765
Rru_A3766: Rru_A3766 - Transcriptional Regulator, MucR family (NCBI), at 4,315,439 to 4,315,861
_A3766
Position (kb) 4313
4314
4315 Strain fitness (log2 ratio) -2
-1
0
1 at 4313.341 kb on + strand at 4313.395 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.568 kb on + strand, within Rru_A3762 at 4313.597 kb on + strand, within Rru_A3762 at 4313.749 kb on + strand, within Rru_A3762 at 4315.032 kb on + strand at 4315.033 kb on - strand at 4315.033 kb on - strand at 4315.062 kb on - strand at 4315.363 kb on - strand at 4315.556 kb on + strand, within Rru_A3766 at 4315.556 kb on + strand, within Rru_A3766 at 4315.557 kb on - strand, within Rru_A3766
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,313,341 + -1.6 4,313,395 + Rru_A3762 0.18 +0.4 4,313,568 + Rru_A3762 0.49 -0.8 4,313,568 + Rru_A3762 0.49 -1.2 4,313,568 + Rru_A3762 0.49 -1.4 4,313,597 + Rru_A3762 0.54 +1.1 4,313,749 + Rru_A3762 0.80 +0.0 4,315,032 + -1.1 4,315,033 - +0.1 4,315,033 - +0.1 4,315,062 - +1.3 4,315,363 - -1.9 4,315,556 + Rru_A3766 0.28 +1.5 4,315,556 + Rru_A3766 0.28 -1.1 4,315,557 - Rru_A3766 0.28 +1.1
Or see this region's nucleotide sequence