Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3712 and Rru_A3713 are separated by 88 nucleotides Rru_A3713 and Rru_A3714 are separated by 166 nucleotides Rru_A3714 and Rru_A3715 are separated by 76 nucleotides
Rru_A3712: Rru_A3712 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 4,262,501 to 4,263,136
_A3712
Rru_A3713: Rru_A3713 - Protein of unknown function DUF159 (NCBI), at 4,263,225 to 4,263,899
_A3713
Rru_A3714: Rru_A3714 - hypothetical protein (NCBI), at 4,264,066 to 4,264,443
_A3714
Rru_A3715: Rru_A3715 - Lipopolysaccharide biosynthesis (NCBI), at 4,264,520 to 4,266,658
_A3715
Position (kb)
4264
4265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4263.134 kb on + strand at 4263.537 kb on + strand, within Rru_A3713 at 4263.537 kb on + strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.573 kb on + strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.578 kb on + strand, within Rru_A3713 at 4263.578 kb on + strand, within Rru_A3713 at 4263.579 kb on - strand, within Rru_A3713 at 4263.579 kb on - strand, within Rru_A3713 at 4264.195 kb on + strand, within Rru_A3714 at 4264.618 kb on - strand at 4264.677 kb on - strand at 4264.905 kb on - strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,263,134 + -1.1 4,263,537 + Rru_A3713 0.46 -0.9 4,263,537 + Rru_A3713 0.46 +1.5 4,263,538 - Rru_A3713 0.46 +0.6 4,263,538 - Rru_A3713 0.46 -0.6 4,263,538 - Rru_A3713 0.46 -0.3 4,263,538 - Rru_A3713 0.46 -0.9 4,263,573 + Rru_A3713 0.52 +1.1 4,263,574 - Rru_A3713 0.52 -1.6 4,263,574 - Rru_A3713 0.52 -3.1 4,263,574 - Rru_A3713 0.52 -2.6 4,263,574 - Rru_A3713 0.52 +0.5 4,263,578 + Rru_A3713 0.52 -0.7 4,263,578 + Rru_A3713 0.52 -1.2 4,263,579 - Rru_A3713 0.52 -0.7 4,263,579 - Rru_A3713 0.52 -3.7 4,264,195 + Rru_A3714 0.34 -0.2 4,264,618 - -1.6 4,264,677 - +1.4 4,264,905 - Rru_A3715 0.18 +0.2 4,265,182 + Rru_A3715 0.31 -0.9 4,265,182 + Rru_A3715 0.31 -2.1 4,265,182 + Rru_A3715 0.31 +2.7 4,265,182 + Rru_A3715 0.31 -1.1 4,265,182 + Rru_A3715 0.31 -2.3 4,265,183 - Rru_A3715 0.31 +0.2 4,265,183 - Rru_A3715 0.31 -0.2 4,265,183 - Rru_A3715 0.31 -1.5 4,265,183 - Rru_A3715 0.31 -3.2
Or see this region's nucleotide sequence