Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3703

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3702 and Rru_A3703 overlap by 4 nucleotidesRru_A3703 and Rru_A3704 are separated by 64 nucleotides Rru_A3702: Rru_A3702 - ABC transporter component (NCBI), at 4,250,676 to 4,251,452 _A3702 Rru_A3703: Rru_A3703 - ABC-3 transporter component (NCBI), at 4,251,449 to 4,252,321 _A3703 Rru_A3704: Rru_A3704 - Periplasmic solute binding protein (NCBI), at 4,252,386 to 4,253,336 _A3704 Position (kb) 4251 4252 4253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4250.517 kb on + strandat 4250.517 kb on + strandat 4251.427 kb on + strandat 4251.730 kb on + strand, within Rru_A3703at 4252.320 kb on - strandat 4252.496 kb on + strand, within Rru_A3704at 4252.497 kb on - strand, within Rru_A3704at 4252.497 kb on - strand, within Rru_A3704at 4252.497 kb on - strand, within Rru_A3704at 4252.497 kb on - strand, within Rru_A3704at 4252.500 kb on - strand, within Rru_A3704at 4252.500 kb on - strand, within Rru_A3704at 4252.584 kb on + strand, within Rru_A3704at 4252.854 kb on + strand, within Rru_A3704at 4252.855 kb on - strand, within Rru_A3704at 4252.911 kb on + strand, within Rru_A3704at 4252.912 kb on - strand, within Rru_A3704at 4252.912 kb on - strand, within Rru_A3704at 4253.034 kb on + strand, within Rru_A3704at 4253.049 kb on + strand, within Rru_A3704at 4253.049 kb on + strand, within Rru_A3704at 4253.050 kb on - strand, within Rru_A3704at 4253.057 kb on + strand, within Rru_A3704at 4253.057 kb on + strand, within Rru_A3704at 4253.057 kb on + strand, within Rru_A3704at 4253.058 kb on - strand, within Rru_A3704at 4253.058 kb on - strand, within Rru_A3704at 4253.280 kb on + strandat 4253.280 kb on + strandat 4253.280 kb on + strandat 4253.281 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
4,250,517 + -1.8
4,250,517 + +3.2
4,251,427 + -1.5
4,251,730 + Rru_A3703 0.32 +0.7
4,252,320 - -0.9
4,252,496 + Rru_A3704 0.12 +0.8
4,252,497 - Rru_A3704 0.12 -0.4
4,252,497 - Rru_A3704 0.12 -3.5
4,252,497 - Rru_A3704 0.12 -0.5
4,252,497 - Rru_A3704 0.12 -1.4
4,252,500 - Rru_A3704 0.12 -0.7
4,252,500 - Rru_A3704 0.12 -0.2
4,252,584 + Rru_A3704 0.21 +0.8
4,252,854 + Rru_A3704 0.49 -1.1
4,252,855 - Rru_A3704 0.49 +0.3
4,252,911 + Rru_A3704 0.55 -0.2
4,252,912 - Rru_A3704 0.55 +3.2
4,252,912 - Rru_A3704 0.55 +5.2
4,253,034 + Rru_A3704 0.68 +0.5
4,253,049 + Rru_A3704 0.70 +3.4
4,253,049 + Rru_A3704 0.70 -1.9
4,253,050 - Rru_A3704 0.70 +2.3
4,253,057 + Rru_A3704 0.71 -1.1
4,253,057 + Rru_A3704 0.71 +0.3
4,253,057 + Rru_A3704 0.71 +0.1
4,253,058 - Rru_A3704 0.71 -0.2
4,253,058 - Rru_A3704 0.71 -0.5
4,253,280 + -0.7
4,253,280 + -1.4
4,253,280 + -1.9
4,253,281 - +2.4

Or see this region's nucleotide sequence