Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3700 and Rru_A3701 are separated by 34 nucleotides Rru_A3701 and Rru_A3702 are separated by 329 nucleotides Rru_A3702 and Rru_A3703 overlap by 4 nucleotides Rru_A3703 and Rru_A3704 are separated by 64 nucleotides
Rru_A3700: Rru_A3700 - Secretion protein HlyD (NCBI), at 4,248,630 to 4,249,775
_A3700
Rru_A3701: Rru_A3701 - Transcriptional Regulator, TetR family (NCBI), at 4,249,810 to 4,250,346
_A3701
Rru_A3702: Rru_A3702 - ABC transporter component (NCBI), at 4,250,676 to 4,251,452
_A3702
Rru_A3703: Rru_A3703 - ABC-3 transporter component (NCBI), at 4,251,449 to 4,252,321
_A3703
Rru_A3704: Rru_A3704 - Periplasmic solute binding protein (NCBI), at 4,252,386 to 4,253,336
_A3704
Position (kb)
4250
4251
4252 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4249.706 kb on + strand at 4249.706 kb on + strand at 4249.778 kb on + strand at 4249.779 kb on - strand at 4249.779 kb on - strand at 4249.779 kb on - strand at 4249.779 kb on - strand at 4249.866 kb on - strand, within Rru_A3701 at 4249.866 kb on - strand, within Rru_A3701 at 4249.866 kb on - strand, within Rru_A3701 at 4249.897 kb on + strand, within Rru_A3701 at 4249.897 kb on + strand, within Rru_A3701 at 4249.897 kb on + strand, within Rru_A3701 at 4249.897 kb on + strand, within Rru_A3701 at 4249.897 kb on + strand, within Rru_A3701 at 4249.898 kb on - strand, within Rru_A3701 at 4250.132 kb on + strand, within Rru_A3701 at 4250.132 kb on + strand, within Rru_A3701 at 4250.133 kb on - strand, within Rru_A3701 at 4250.135 kb on + strand, within Rru_A3701 at 4250.192 kb on - strand, within Rru_A3701 at 4250.192 kb on - strand, within Rru_A3701 at 4250.217 kb on - strand, within Rru_A3701 at 4250.383 kb on + strand at 4250.517 kb on + strand at 4250.517 kb on + strand at 4251.427 kb on + strand at 4251.730 kb on + strand, within Rru_A3703 at 4252.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,249,706 + -1.4 4,249,706 + +0.5 4,249,778 + +0.1 4,249,779 - -1.4 4,249,779 - -2.4 4,249,779 - -0.9 4,249,779 - -0.6 4,249,866 - Rru_A3701 0.10 +2.1 4,249,866 - Rru_A3701 0.10 +1.1 4,249,866 - Rru_A3701 0.10 -1.5 4,249,897 + Rru_A3701 0.16 +0.5 4,249,897 + Rru_A3701 0.16 -5.2 4,249,897 + Rru_A3701 0.16 -3.7 4,249,897 + Rru_A3701 0.16 -1.0 4,249,897 + Rru_A3701 0.16 +0.3 4,249,898 - Rru_A3701 0.16 -0.7 4,250,132 + Rru_A3701 0.60 -3.2 4,250,132 + Rru_A3701 0.60 -1.7 4,250,133 - Rru_A3701 0.60 -1.8 4,250,135 + Rru_A3701 0.61 -0.3 4,250,192 - Rru_A3701 0.71 +0.8 4,250,192 - Rru_A3701 0.71 +1.1 4,250,217 - Rru_A3701 0.76 -1.2 4,250,383 + -0.3 4,250,517 + -1.8 4,250,517 + +3.2 4,251,427 + -1.5 4,251,730 + Rru_A3703 0.32 +0.7 4,252,320 - -0.9
Or see this region's nucleotide sequence