Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3702

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3700 and Rru_A3701 are separated by 34 nucleotidesRru_A3701 and Rru_A3702 are separated by 329 nucleotidesRru_A3702 and Rru_A3703 overlap by 4 nucleotidesRru_A3703 and Rru_A3704 are separated by 64 nucleotides Rru_A3700: Rru_A3700 - Secretion protein HlyD (NCBI), at 4,248,630 to 4,249,775 _A3700 Rru_A3701: Rru_A3701 - Transcriptional Regulator, TetR family (NCBI), at 4,249,810 to 4,250,346 _A3701 Rru_A3702: Rru_A3702 - ABC transporter component (NCBI), at 4,250,676 to 4,251,452 _A3702 Rru_A3703: Rru_A3703 - ABC-3 transporter component (NCBI), at 4,251,449 to 4,252,321 _A3703 Rru_A3704: Rru_A3704 - Periplasmic solute binding protein (NCBI), at 4,252,386 to 4,253,336 _A3704 Position (kb) 4250 4251 4252Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4249.706 kb on + strandat 4249.706 kb on + strandat 4249.778 kb on + strandat 4249.779 kb on - strandat 4249.779 kb on - strandat 4249.779 kb on - strandat 4249.779 kb on - strandat 4249.866 kb on - strand, within Rru_A3701at 4249.866 kb on - strand, within Rru_A3701at 4249.866 kb on - strand, within Rru_A3701at 4249.897 kb on + strand, within Rru_A3701at 4249.897 kb on + strand, within Rru_A3701at 4249.897 kb on + strand, within Rru_A3701at 4249.897 kb on + strand, within Rru_A3701at 4249.897 kb on + strand, within Rru_A3701at 4249.898 kb on - strand, within Rru_A3701at 4250.132 kb on + strand, within Rru_A3701at 4250.132 kb on + strand, within Rru_A3701at 4250.133 kb on - strand, within Rru_A3701at 4250.135 kb on + strand, within Rru_A3701at 4250.192 kb on - strand, within Rru_A3701at 4250.192 kb on - strand, within Rru_A3701at 4250.217 kb on - strand, within Rru_A3701at 4250.383 kb on + strandat 4250.517 kb on + strandat 4250.517 kb on + strandat 4251.427 kb on + strandat 4251.730 kb on + strand, within Rru_A3703at 4252.320 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
4,249,706 + -1.4
4,249,706 + +0.5
4,249,778 + +0.1
4,249,779 - -1.4
4,249,779 - -2.4
4,249,779 - -0.9
4,249,779 - -0.6
4,249,866 - Rru_A3701 0.10 +2.1
4,249,866 - Rru_A3701 0.10 +1.1
4,249,866 - Rru_A3701 0.10 -1.5
4,249,897 + Rru_A3701 0.16 +0.5
4,249,897 + Rru_A3701 0.16 -5.2
4,249,897 + Rru_A3701 0.16 -3.7
4,249,897 + Rru_A3701 0.16 -1.0
4,249,897 + Rru_A3701 0.16 +0.3
4,249,898 - Rru_A3701 0.16 -0.7
4,250,132 + Rru_A3701 0.60 -3.2
4,250,132 + Rru_A3701 0.60 -1.7
4,250,133 - Rru_A3701 0.60 -1.8
4,250,135 + Rru_A3701 0.61 -0.3
4,250,192 - Rru_A3701 0.71 +0.8
4,250,192 - Rru_A3701 0.71 +1.1
4,250,217 - Rru_A3701 0.76 -1.2
4,250,383 + -0.3
4,250,517 + -1.8
4,250,517 + +3.2
4,251,427 + -1.5
4,251,730 + Rru_A3703 0.32 +0.7
4,252,320 - -0.9

Or see this region's nucleotide sequence