Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3688 and Rru_A3689 overlap by 4 nucleotides Rru_A3689 and Rru_A3690 overlap by 4 nucleotides Rru_A3690 and Rru_A3691 are separated by 183 nucleotides Rru_A3691 and Rru_A3692 are separated by 29 nucleotides
Rru_A3688: Rru_A3688 - ABC transporter component (NCBI), at 4,235,114 to 4,235,815
_A3688
Rru_A3689: Rru_A3689 - MaoC-like dehydratase (NCBI), at 4,235,812 to 4,236,264
_A3689
Rru_A3690: Rru_A3690 - Glutathione synthetase (NCBI), at 4,236,261 to 4,237,217
_A3690
Rru_A3691: Rru_A3691 - Transport-associated (NCBI), at 4,237,401 to 4,238,036
_A3691
Rru_A3692: Rru_A3692 - Protein of unknown function UPF0102 (NCBI), at 4,238,066 to 4,238,443
_A3692
Position (kb) 4236
4237
4238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.410 kb on + strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.411 kb on - strand, within Rru_A3688 at 4235.412 kb on + strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.413 kb on - strand, within Rru_A3688 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4235.901 kb on - strand, within Rru_A3689 at 4236.023 kb on + strand, within Rru_A3689 at 4236.023 kb on + strand, within Rru_A3689 at 4237.218 kb on - strand at 4237.260 kb on + strand at 4237.261 kb on - strand at 4237.372 kb on + strand at 4237.373 kb on - strand at 4237.471 kb on + strand, within Rru_A3691 at 4237.472 kb on - strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.552 kb on + strand, within Rru_A3691 at 4237.553 kb on - strand, within Rru_A3691 at 4237.771 kb on - strand, within Rru_A3691 at 4237.771 kb on - strand, within Rru_A3691 at 4237.778 kb on + strand, within Rru_A3691 at 4237.778 kb on + strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.779 kb on - strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.780 kb on + strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4237.781 kb on - strand, within Rru_A3691 at 4238.067 kb on + strand at 4238.067 kb on + strand at 4238.067 kb on + strand at 4238.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,235,410 + Rru_A3688 0.42 +1.7 4,235,410 + Rru_A3688 0.42 -2.2 4,235,410 + Rru_A3688 0.42 -1.7 4,235,410 + Rru_A3688 0.42 -0.7 4,235,410 + Rru_A3688 0.42 +2.1 4,235,410 + Rru_A3688 0.42 -0.7 4,235,411 - Rru_A3688 0.42 +1.7 4,235,411 - Rru_A3688 0.42 -0.2 4,235,411 - Rru_A3688 0.42 -0.7 4,235,411 - Rru_A3688 0.42 -0.2 4,235,411 - Rru_A3688 0.42 +1.8 4,235,411 - Rru_A3688 0.42 +0.8 4,235,412 + Rru_A3688 0.42 -1.1 4,235,413 - Rru_A3688 0.43 +0.9 4,235,413 - Rru_A3688 0.43 -1.2 4,235,413 - Rru_A3688 0.43 -0.8 4,235,901 - Rru_A3689 0.20 -2.5 4,235,901 - Rru_A3689 0.20 +0.7 4,235,901 - Rru_A3689 0.20 -0.9 4,235,901 - Rru_A3689 0.20 -1.7 4,236,023 + Rru_A3689 0.47 +0.2 4,236,023 + Rru_A3689 0.47 +2.1 4,237,218 - +0.5 4,237,260 + -3.7 4,237,261 - +2.6 4,237,372 + -1.1 4,237,373 - -0.9 4,237,471 + Rru_A3691 0.11 -0.2 4,237,472 - Rru_A3691 0.11 -0.2 4,237,552 + Rru_A3691 0.24 -4.5 4,237,552 + Rru_A3691 0.24 -0.5 4,237,552 + Rru_A3691 0.24 -1.5 4,237,552 + Rru_A3691 0.24 +0.1 4,237,553 - Rru_A3691 0.24 -2.7 4,237,771 - Rru_A3691 0.58 -1.8 4,237,771 - Rru_A3691 0.58 +1.5 4,237,778 + Rru_A3691 0.59 +0.5 4,237,778 + Rru_A3691 0.59 -1.2 4,237,779 - Rru_A3691 0.59 -2.4 4,237,779 - Rru_A3691 0.59 -2.4 4,237,779 - Rru_A3691 0.59 -2.5 4,237,780 + Rru_A3691 0.60 -0.7 4,237,780 + Rru_A3691 0.60 -1.5 4,237,780 + Rru_A3691 0.60 -2.0 4,237,780 + Rru_A3691 0.60 -0.9 4,237,780 + Rru_A3691 0.60 -1.2 4,237,781 - Rru_A3691 0.60 -2.2 4,237,781 - Rru_A3691 0.60 +0.5 4,237,781 - Rru_A3691 0.60 -2.0 4,237,781 - Rru_A3691 0.60 -2.2 4,238,067 + +0.6 4,238,067 + -0.4 4,238,067 + -1.4 4,238,068 - +0.5
Or see this region's nucleotide sequence