Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3670 and Rru_A3671 are separated by 68 nucleotides Rru_A3671 and Rru_A3672 are separated by 109 nucleotides Rru_A3672 and Rru_A3673 are separated by 89 nucleotides
Rru_A3670: Rru_A3670 - Potassium efflux system protein (NCBI), at 4,216,008 to 4,217,738
_A3670
Rru_A3671: Rru_A3671 - SecD export membrane protein (NCBI), at 4,217,807 to 4,220,368
_A3671
Rru_A3672: Rru_A3672 - hypothetical protein (NCBI), at 4,220,478 to 4,220,837
_A3672
Rru_A3673: Rru_A3673 - Glutaconyl-CoA decarboxylase (NCBI), at 4,220,927 to 4,222,057
_A3673
Position (kb)
4217
4218
4219
4220
4221 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4217.104 kb on + strand, within Rru_A3670 at 4217.104 kb on + strand, within Rru_A3670 at 4217.105 kb on - strand, within Rru_A3670 at 4217.105 kb on - strand, within Rru_A3670 at 4217.149 kb on + strand, within Rru_A3670 at 4217.193 kb on + strand, within Rru_A3670 at 4217.736 kb on + strand at 4217.736 kb on + strand at 4217.736 kb on + strand at 4217.736 kb on + strand at 4217.737 kb on - strand at 4220.897 kb on - strand at 4220.897 kb on - strand at 4220.897 kb on - strand at 4220.898 kb on + strand at 4220.899 kb on - strand at 4220.899 kb on - strand at 4220.929 kb on - strand at 4221.012 kb on + strand at 4221.012 kb on + strand at 4221.013 kb on - strand at 4221.013 kb on - strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.021 kb on + strand at 4221.022 kb on - strand at 4221.053 kb on - strand, within Rru_A3673
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,217,104 + Rru_A3670 0.63 +1.4 4,217,104 + Rru_A3670 0.63 +3.1 4,217,105 - Rru_A3670 0.63 -0.2 4,217,105 - Rru_A3670 0.63 +3.4 4,217,149 + Rru_A3670 0.66 +3.7 4,217,193 + Rru_A3670 0.68 -2.4 4,217,736 + +1.1 4,217,736 + +0.5 4,217,736 + -0.8 4,217,736 + -2.5 4,217,737 - +2.6 4,220,897 - -0.8 4,220,897 - +0.8 4,220,897 - +0.5 4,220,898 + -2.3 4,220,899 - +0.5 4,220,899 - -1.6 4,220,929 - +1.0 4,221,012 + +0.0 4,221,012 + -1.6 4,221,013 - -1.0 4,221,013 - +2.1 4,221,021 + +1.8 4,221,021 + -1.4 4,221,021 + +0.5 4,221,021 + +2.7 4,221,021 + -0.9 4,221,021 + -2.4 4,221,021 + -1.6 4,221,021 + +1.8 4,221,021 + +0.3 4,221,022 - -1.1 4,221,053 - Rru_A3673 0.11 -0.8
Or see this region's nucleotide sequence