Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3671

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3670 and Rru_A3671 are separated by 68 nucleotidesRru_A3671 and Rru_A3672 are separated by 109 nucleotidesRru_A3672 and Rru_A3673 are separated by 89 nucleotides Rru_A3670: Rru_A3670 - Potassium efflux system protein (NCBI), at 4,216,008 to 4,217,738 _A3670 Rru_A3671: Rru_A3671 - SecD export membrane protein (NCBI), at 4,217,807 to 4,220,368 _A3671 Rru_A3672: Rru_A3672 - hypothetical protein (NCBI), at 4,220,478 to 4,220,837 _A3672 Rru_A3673: Rru_A3673 - Glutaconyl-CoA decarboxylase (NCBI), at 4,220,927 to 4,222,057 _A3673 Position (kb) 4217 4218 4219 4220 4221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4217.104 kb on + strand, within Rru_A3670at 4217.104 kb on + strand, within Rru_A3670at 4217.105 kb on - strand, within Rru_A3670at 4217.105 kb on - strand, within Rru_A3670at 4217.149 kb on + strand, within Rru_A3670at 4217.193 kb on + strand, within Rru_A3670at 4217.736 kb on + strandat 4217.736 kb on + strandat 4217.736 kb on + strandat 4217.736 kb on + strandat 4217.737 kb on - strandat 4220.897 kb on - strandat 4220.897 kb on - strandat 4220.897 kb on - strandat 4220.898 kb on + strandat 4220.899 kb on - strandat 4220.899 kb on - strandat 4220.929 kb on - strandat 4221.012 kb on + strandat 4221.012 kb on + strandat 4221.013 kb on - strandat 4221.013 kb on - strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.021 kb on + strandat 4221.022 kb on - strandat 4221.053 kb on - strand, within Rru_A3673

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,217,104 + Rru_A3670 0.63 +1.4
4,217,104 + Rru_A3670 0.63 +3.1
4,217,105 - Rru_A3670 0.63 -0.2
4,217,105 - Rru_A3670 0.63 +3.4
4,217,149 + Rru_A3670 0.66 +3.7
4,217,193 + Rru_A3670 0.68 -2.4
4,217,736 + +1.1
4,217,736 + +0.5
4,217,736 + -0.8
4,217,736 + -2.5
4,217,737 - +2.6
4,220,897 - -0.8
4,220,897 - +0.8
4,220,897 - +0.5
4,220,898 + -2.3
4,220,899 - +0.5
4,220,899 - -1.6
4,220,929 - +1.0
4,221,012 + +0.0
4,221,012 + -1.6
4,221,013 - -1.0
4,221,013 - +2.1
4,221,021 + +1.8
4,221,021 + -1.4
4,221,021 + +0.5
4,221,021 + +2.7
4,221,021 + -0.9
4,221,021 + -2.4
4,221,021 + -1.6
4,221,021 + +1.8
4,221,021 + +0.3
4,221,022 - -1.1
4,221,053 - Rru_A3673 0.11 -0.8

Or see this region's nucleotide sequence