Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3664

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3663 and Rru_A3664 are separated by 125 nucleotidesRru_A3664 and Rru_A3665 are separated by 145 nucleotides Rru_A3663: Rru_A3663 - NAD-glutamate dehydrogenase (NCBI), at 4,204,911 to 4,209,788 _A3663 Rru_A3664: Rru_A3664 - ABC transporter component (NCBI), at 4,209,914 to 4,210,606 _A3664 Rru_A3665: Rru_A3665 - chemotaxis sensory transducer (NCBI), at 4,210,752 to 4,212,455 _A3665 Position (kb) 4209 4210 4211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4208.922 kb on - strand, within Rru_A3663at 4209.067 kb on + strand, within Rru_A3663at 4209.067 kb on + strand, within Rru_A3663at 4209.067 kb on + strand, within Rru_A3663at 4209.067 kb on + strand, within Rru_A3663at 4209.067 kb on + strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.068 kb on - strand, within Rru_A3663at 4209.317 kb on + strandat 4209.318 kb on - strandat 4209.375 kb on + strandat 4209.375 kb on + strandat 4209.375 kb on + strandat 4209.375 kb on + strandat 4209.375 kb on + strandat 4209.375 kb on + strandat 4209.376 kb on - strandat 4209.376 kb on - strandat 4209.376 kb on - strandat 4209.376 kb on - strandat 4209.376 kb on - strandat 4209.509 kb on + strandat 4209.509 kb on + strandat 4209.509 kb on + strandat 4209.510 kb on - strandat 4209.619 kb on + strandat 4209.620 kb on - strandat 4209.673 kb on + strandat 4209.673 kb on + strandat 4209.673 kb on + strandat 4209.674 kb on - strandat 4209.826 kb on - strandat 4210.687 kb on + strandat 4210.716 kb on - strandat 4210.780 kb on + strandat 4210.780 kb on + strandat 4210.895 kb on + strandat 4210.895 kb on + strandat 4210.896 kb on - strandat 4211.081 kb on + strand, within Rru_A3665at 4211.452 kb on + strand, within Rru_A3665at 4211.453 kb on - strand, within Rru_A3665at 4211.453 kb on - strand, within Rru_A3665

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,208,922 - Rru_A3663 0.82 -2.9
4,209,067 + Rru_A3663 0.85 -3.2
4,209,067 + Rru_A3663 0.85 -3.0
4,209,067 + Rru_A3663 0.85 -2.2
4,209,067 + Rru_A3663 0.85 -4.3
4,209,067 + Rru_A3663 0.85 +0.5
4,209,068 - Rru_A3663 0.85 -1.5
4,209,068 - Rru_A3663 0.85 -0.9
4,209,068 - Rru_A3663 0.85 -2.1
4,209,068 - Rru_A3663 0.85 +2.1
4,209,068 - Rru_A3663 0.85 +1.6
4,209,068 - Rru_A3663 0.85 +1.3
4,209,068 - Rru_A3663 0.85 -0.5
4,209,068 - Rru_A3663 0.85 -1.6
4,209,317 + +0.7
4,209,318 - +1.5
4,209,375 + +1.1
4,209,375 + -2.4
4,209,375 + -1.6
4,209,375 + -0.2
4,209,375 + -1.9
4,209,375 + +1.4
4,209,376 - +0.1
4,209,376 - -0.2
4,209,376 - +0.5
4,209,376 - -1.6
4,209,376 - -1.4
4,209,509 + +1.3
4,209,509 + +0.1
4,209,509 + +1.0
4,209,510 - -0.7
4,209,619 + -4.2
4,209,620 - +2.2
4,209,673 + +0.3
4,209,673 + -2.2
4,209,673 + -0.4
4,209,674 - -1.2
4,209,826 - +0.9
4,210,687 + -0.4
4,210,716 - -3.1
4,210,780 + -1.6
4,210,780 + -1.9
4,210,895 + -0.0
4,210,895 + +2.1
4,210,896 - -2.7
4,211,081 + Rru_A3665 0.19 +0.8
4,211,452 + Rru_A3665 0.41 -1.2
4,211,453 - Rru_A3665 0.41 +0.5
4,211,453 - Rru_A3665 0.41 -1.2

Or see this region's nucleotide sequence