Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3663 and Rru_A3664 are separated by 125 nucleotides Rru_A3664 and Rru_A3665 are separated by 145 nucleotides
Rru_A3663: Rru_A3663 - NAD-glutamate dehydrogenase (NCBI), at 4,204,911 to 4,209,788
_A3663
Rru_A3664: Rru_A3664 - ABC transporter component (NCBI), at 4,209,914 to 4,210,606
_A3664
Rru_A3665: Rru_A3665 - chemotaxis sensory transducer (NCBI), at 4,210,752 to 4,212,455
_A3665
Position (kb)
4209
4210
4211 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4208.922 kb on - strand, within Rru_A3663 at 4209.067 kb on + strand, within Rru_A3663 at 4209.067 kb on + strand, within Rru_A3663 at 4209.067 kb on + strand, within Rru_A3663 at 4209.067 kb on + strand, within Rru_A3663 at 4209.067 kb on + strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.068 kb on - strand, within Rru_A3663 at 4209.317 kb on + strand at 4209.318 kb on - strand at 4209.375 kb on + strand at 4209.375 kb on + strand at 4209.375 kb on + strand at 4209.375 kb on + strand at 4209.375 kb on + strand at 4209.375 kb on + strand at 4209.376 kb on - strand at 4209.376 kb on - strand at 4209.376 kb on - strand at 4209.376 kb on - strand at 4209.376 kb on - strand at 4209.509 kb on + strand at 4209.509 kb on + strand at 4209.509 kb on + strand at 4209.510 kb on - strand at 4209.619 kb on + strand at 4209.620 kb on - strand at 4209.673 kb on + strand at 4209.673 kb on + strand at 4209.673 kb on + strand at 4209.674 kb on - strand at 4209.826 kb on - strand at 4210.687 kb on + strand at 4210.716 kb on - strand at 4210.780 kb on + strand at 4210.780 kb on + strand at 4210.895 kb on + strand at 4210.895 kb on + strand at 4210.896 kb on - strand at 4211.081 kb on + strand, within Rru_A3665 at 4211.452 kb on + strand, within Rru_A3665 at 4211.453 kb on - strand, within Rru_A3665 at 4211.453 kb on - strand, within Rru_A3665
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,208,922 - Rru_A3663 0.82 -2.9 4,209,067 + Rru_A3663 0.85 -3.2 4,209,067 + Rru_A3663 0.85 -3.0 4,209,067 + Rru_A3663 0.85 -2.2 4,209,067 + Rru_A3663 0.85 -4.3 4,209,067 + Rru_A3663 0.85 +0.5 4,209,068 - Rru_A3663 0.85 -1.5 4,209,068 - Rru_A3663 0.85 -0.9 4,209,068 - Rru_A3663 0.85 -2.1 4,209,068 - Rru_A3663 0.85 +2.1 4,209,068 - Rru_A3663 0.85 +1.6 4,209,068 - Rru_A3663 0.85 +1.3 4,209,068 - Rru_A3663 0.85 -0.5 4,209,068 - Rru_A3663 0.85 -1.6 4,209,317 + +0.7 4,209,318 - +1.5 4,209,375 + +1.1 4,209,375 + -2.4 4,209,375 + -1.6 4,209,375 + -0.2 4,209,375 + -1.9 4,209,375 + +1.4 4,209,376 - +0.1 4,209,376 - -0.2 4,209,376 - +0.5 4,209,376 - -1.6 4,209,376 - -1.4 4,209,509 + +1.3 4,209,509 + +0.1 4,209,509 + +1.0 4,209,510 - -0.7 4,209,619 + -4.2 4,209,620 - +2.2 4,209,673 + +0.3 4,209,673 + -2.2 4,209,673 + -0.4 4,209,674 - -1.2 4,209,826 - +0.9 4,210,687 + -0.4 4,210,716 - -3.1 4,210,780 + -1.6 4,210,780 + -1.9 4,210,895 + -0.0 4,210,895 + +2.1 4,210,896 - -2.7 4,211,081 + Rru_A3665 0.19 +0.8 4,211,452 + Rru_A3665 0.41 -1.2 4,211,453 - Rru_A3665 0.41 +0.5 4,211,453 - Rru_A3665 0.41 -1.2
Or see this region's nucleotide sequence