Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3645 and Rru_A3646 are separated by 85 nucleotides Rru_A3646 and Rru_A3647 are separated by 13 nucleotides Rru_A3647 and Rru_A3648 are separated by 101 nucleotides
Rru_A3645: Rru_A3645 - Silent information regulator protein Sir2 (NCBI), at 4,185,499 to 4,186,230
_A3645
Rru_A3646: Rru_A3646 - Protein tyrosine phosphatase (NCBI), at 4,186,316 to 4,186,807
_A3646
Rru_A3647: Rru_A3647 - hypothetical protein (NCBI), at 4,186,821 to 4,187,435
_A3647
Rru_A3648: Rru_A3648 - Aminoglycoside phosphotransferase (NCBI), at 4,187,537 to 4,188,391
_A3648
Position (kb) 4186
4187
4188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4185.904 kb on - strand, within Rru_A3645 at 4185.904 kb on - strand, within Rru_A3645 at 4185.904 kb on - strand, within Rru_A3645 at 4186.056 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.058 kb on + strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.059 kb on - strand, within Rru_A3645 at 4186.234 kb on + strand at 4186.234 kb on + strand at 4186.234 kb on + strand at 4186.235 kb on - strand at 4186.235 kb on - strand at 4186.275 kb on - strand at 4186.348 kb on + strand at 4186.348 kb on + strand at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.697 kb on + strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.701 kb on - strand, within Rru_A3646 at 4187.442 kb on - strand at 4187.478 kb on - strand at 4188.176 kb on + strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.178 kb on + strand, within Rru_A3648 at 4188.179 kb on - strand, within Rru_A3648 at 4188.245 kb on + strand, within Rru_A3648 at 4188.299 kb on + strand, within Rru_A3648
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,185,904 - Rru_A3645 0.55 -1.1 4,185,904 - Rru_A3645 0.55 -0.7 4,185,904 - Rru_A3645 0.55 -0.5 4,186,056 + Rru_A3645 0.76 -3.6 4,186,058 + Rru_A3645 0.76 +1.6 4,186,058 + Rru_A3645 0.76 +1.8 4,186,058 + Rru_A3645 0.76 -2.0 4,186,058 + Rru_A3645 0.76 +1.1 4,186,058 + Rru_A3645 0.76 -0.4 4,186,058 + Rru_A3645 0.76 +0.3 4,186,059 - Rru_A3645 0.77 +0.7 4,186,059 - Rru_A3645 0.77 +1.7 4,186,059 - Rru_A3645 0.77 +1.3 4,186,059 - Rru_A3645 0.77 +0.1 4,186,234 + +0.1 4,186,234 + +1.1 4,186,234 + +1.5 4,186,235 - -0.1 4,186,235 - -1.5 4,186,275 - +1.9 4,186,348 + -2.3 4,186,348 + -3.5 4,186,611 + Rru_A3646 0.60 -2.1 4,186,611 + Rru_A3646 0.60 +0.4 4,186,611 + Rru_A3646 0.60 -0.9 4,186,612 - Rru_A3646 0.60 +0.6 4,186,612 - Rru_A3646 0.60 -2.9 4,186,612 - Rru_A3646 0.60 -0.5 4,186,612 - Rru_A3646 0.60 -1.7 4,186,697 + Rru_A3646 0.77 -0.4 4,186,698 - Rru_A3646 0.78 +1.6 4,186,698 - Rru_A3646 0.78 +0.1 4,186,700 + Rru_A3646 0.78 +2.1 4,186,700 + Rru_A3646 0.78 +0.8 4,186,700 + Rru_A3646 0.78 +0.5 4,186,700 + Rru_A3646 0.78 +0.0 4,186,701 - Rru_A3646 0.78 -2.2 4,187,442 - +0.0 4,187,478 - +3.3 4,188,176 + Rru_A3648 0.75 +0.3 4,188,177 - Rru_A3648 0.75 -1.4 4,188,177 - Rru_A3648 0.75 -1.8 4,188,177 - Rru_A3648 0.75 +3.7 4,188,177 - Rru_A3648 0.75 +0.4 4,188,178 + Rru_A3648 0.75 -1.2 4,188,179 - Rru_A3648 0.75 -1.4 4,188,245 + Rru_A3648 0.83 -0.3 4,188,299 + Rru_A3648 0.89 +0.4
Or see this region's nucleotide sequence