Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3642 and Rru_A3643 are separated by 48 nucleotides Rru_A3643 and Rru_A3644 are separated by 128 nucleotides Rru_A3644 and Rru_A3645 overlap by 4 nucleotides
Rru_A3642: Rru_A3642 - Negative regulator of class I heat shock protein (NCBI), at 4,183,002 to 4,184,060
_A3642
Rru_A3643: Rru_A3643 - GrpE protein (NCBI), at 4,184,109 to 4,184,774
_A3643
Rru_A3644: Rru_A3644 - Uracil-DNA glycosylase superfamily (NCBI), at 4,184,903 to 4,185,502
_A3644
Rru_A3645: Rru_A3645 - Silent information regulator protein Sir2 (NCBI), at 4,185,499 to 4,186,230
_A3645
Position (kb)
4184
4185 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4183.570 kb on - strand, within Rru_A3642 at 4183.845 kb on - strand, within Rru_A3642 at 4183.845 kb on - strand, within Rru_A3642 at 4184.833 kb on + strand at 4184.833 kb on + strand at 4184.834 kb on - strand at 4185.079 kb on - strand, within Rru_A3644 at 4185.256 kb on - strand, within Rru_A3644 at 4185.256 kb on - strand, within Rru_A3644 at 4185.256 kb on - strand, within Rru_A3644 at 4185.256 kb on - strand, within Rru_A3644 at 4185.536 kb on + strand at 4185.537 kb on - strand at 4185.537 kb on - strand at 4185.566 kb on + strand at 4185.566 kb on + strand at 4185.567 kb on - strand at 4185.624 kb on + strand, within Rru_A3645
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,183,570 - Rru_A3642 0.54 +0.5 4,183,845 - Rru_A3642 0.80 +3.3 4,183,845 - Rru_A3642 0.80 -0.5 4,184,833 + -0.2 4,184,833 + +0.5 4,184,834 - -1.2 4,185,079 - Rru_A3644 0.29 -0.6 4,185,256 - Rru_A3644 0.59 +0.1 4,185,256 - Rru_A3644 0.59 -1.1 4,185,256 - Rru_A3644 0.59 -1.4 4,185,256 - Rru_A3644 0.59 -1.0 4,185,536 + -0.9 4,185,537 - -2.2 4,185,537 - +0.2 4,185,566 + -0.6 4,185,566 + +0.2 4,185,567 - -2.7 4,185,624 + Rru_A3645 0.17 -1.7
Or see this region's nucleotide sequence