Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3636 and Rru_A3637 are separated by 264 nucleotides Rru_A3637 and Rru_A3638 are separated by 89 nucleotides Rru_A3638 and Rru_A3639 overlap by 19 nucleotides
Rru_A3636: Rru_A3636 - hypothetical protein (NCBI), at 4,176,516 to 4,177,910
_A3636
Rru_A3637: Rru_A3637 - GTP cyclohydrolase II (NCBI), at 4,178,175 to 4,179,329
_A3637
Rru_A3638: Rru_A3638 - Two component Transcriptional regulator, Winged helix family (NCBI), at 4,179,419 to 4,180,231
_A3638
Rru_A3639: Rru_A3639 - Putative oxygen-independent coproporphyrinogen III oxidase (NCBI), at 4,180,213 to 4,181,457
_A3639
Position (kb)
4178
4179
4180 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4177.231 kb on + strand, within Rru_A3636 at 4177.232 kb on - strand, within Rru_A3636 at 4177.379 kb on - strand, within Rru_A3636 at 4177.379 kb on - strand, within Rru_A3636 at 4177.561 kb on + strand, within Rru_A3636 at 4178.100 kb on + strand at 4178.100 kb on + strand at 4178.101 kb on - strand at 4178.163 kb on + strand at 4178.164 kb on - strand at 4178.164 kb on - strand at 4179.396 kb on + strand at 4179.396 kb on + strand at 4179.401 kb on - strand at 4179.401 kb on - strand at 4179.401 kb on - strand at 4179.401 kb on - strand at 4179.401 kb on - strand at 4179.401 kb on - strand at 4179.474 kb on + strand at 4179.474 kb on + strand at 4179.474 kb on + strand at 4179.474 kb on + strand at 4179.474 kb on + strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.475 kb on - strand at 4179.478 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,177,231 + Rru_A3636 0.51 -0.1 4,177,232 - Rru_A3636 0.51 -2.0 4,177,379 - Rru_A3636 0.62 +0.1 4,177,379 - Rru_A3636 0.62 +0.3 4,177,561 + Rru_A3636 0.75 -1.8 4,178,100 + +0.5 4,178,100 + +0.8 4,178,101 - +0.1 4,178,163 + -1.6 4,178,164 - -0.7 4,178,164 - -1.5 4,179,396 + +2.1 4,179,396 + -2.9 4,179,401 - +2.1 4,179,401 - +1.6 4,179,401 - -3.2 4,179,401 - +1.2 4,179,401 - -1.4 4,179,401 - -0.4 4,179,474 + -2.2 4,179,474 + +0.4 4,179,474 + +2.9 4,179,474 + -1.4 4,179,474 + +1.1 4,179,475 - +4.7 4,179,475 - -0.0 4,179,475 - +1.4 4,179,475 - +0.5 4,179,475 - +0.5 4,179,475 - +0.3 4,179,475 - +2.5 4,179,475 - +1.2 4,179,475 - +0.8 4,179,478 + -3.3
Or see this region's nucleotide sequence