Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3632

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3631 and Rru_A3632 are separated by 94 nucleotidesRru_A3632 and Rru_A3633 are separated by 51 nucleotidesRru_A3633 and Rru_A3634 are separated by 71 nucleotides Rru_A3631: Rru_A3631 - Leucyl-tRNA synthetase, class Ia (NCBI), at 4,171,032 to 4,173,620 _A3631 Rru_A3632: Rru_A3632 - hypothetical protein (NCBI), at 4,173,715 to 4,174,320 _A3632 Rru_A3633: Rru_A3633 - Thiamine monophosphate synthase (NCBI), at 4,174,372 to 4,175,190 _A3633 Rru_A3634: Rru_A3634 - Protein of unknown function UPF0001 (NCBI), at 4,175,262 to 4,175,990 _A3634 Position (kb) 4173 4174 4175Strain fitness (log2 ratio) -1 0 1 2at 4173.602 kb on - strandat 4174.397 kb on - strandat 4175.098 kb on + strand, within Rru_A3633at 4175.099 kb on - strand, within Rru_A3633at 4175.099 kb on - strand, within Rru_A3633at 4175.137 kb on + strandat 4175.137 kb on + strandat 4175.154 kb on + strandat 4175.154 kb on + strandat 4175.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,173,602 - +1.1
4,174,397 - +0.4
4,175,098 + Rru_A3633 0.89 +1.1
4,175,099 - Rru_A3633 0.89 +1.6
4,175,099 - Rru_A3633 0.89 +2.2
4,175,137 + -1.2
4,175,137 + +1.1
4,175,154 + -1.7
4,175,154 + -0.7
4,175,166 + +1.1

Or see this region's nucleotide sequence