Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3631

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3629 and Rru_A3630 are separated by 8 nucleotidesRru_A3630 and Rru_A3631 overlap by 14 nucleotidesRru_A3631 and Rru_A3632 are separated by 94 nucleotidesRru_A3632 and Rru_A3633 are separated by 51 nucleotides Rru_A3629: Rru_A3629 - DNA polymerase III, delta subunit (NCBI), at 4,169,445 to 4,170,473 _A3629 Rru_A3630: Rru_A3630 - Twin-arginine translocation pathway signal (NCBI), at 4,170,482 to 4,171,045 _A3630 Rru_A3631: Rru_A3631 - Leucyl-tRNA synthetase, class Ia (NCBI), at 4,171,032 to 4,173,620 _A3631 Rru_A3632: Rru_A3632 - hypothetical protein (NCBI), at 4,173,715 to 4,174,320 _A3632 Rru_A3633: Rru_A3633 - Thiamine monophosphate synthase (NCBI), at 4,174,372 to 4,175,190 _A3633 Position (kb) 4171 4172 4173 4174Strain fitness (log2 ratio) -1 0 1 2at 4170.523 kb on - strandat 4173.602 kb on - strandat 4174.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,170,523 - +2.1
4,173,602 - +1.1
4,174,397 - +0.4

Or see this region's nucleotide sequence