Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3622 and Rru_A3623 are separated by 200 nucleotides Rru_A3623 and Rru_A3624 are separated by 29 nucleotides Rru_A3624 and Rru_A3625 are separated by 59 nucleotides
Rru_A3622: Rru_A3622 - Protein of unknown function DUF255 (NCBI), at 4,160,797 to 4,162,839
_A3622
Rru_A3623: Rru_A3623 - hypothetical protein (NCBI), at 4,163,040 to 4,163,315
_A3623
Rru_A3624: Rru_A3624 - tRNA modification GTPase TrmE (NCBI), at 4,163,345 to 4,164,712
_A3624
Rru_A3625: Rru_A3625 - Glucose-inhibited division protein A subfamily (NCBI), at 4,164,772 to 4,166,661
_A3625
Position (kb)
4163
4164
4165 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4162.472 kb on + strand, within Rru_A3622 at 4162.472 kb on + strand, within Rru_A3622 at 4162.472 kb on + strand, within Rru_A3622 at 4162.566 kb on - strand, within Rru_A3622 at 4162.803 kb on - strand at 4162.803 kb on - strand at 4162.877 kb on + strand at 4162.877 kb on + strand at 4162.878 kb on - strand at 4162.886 kb on - strand at 4162.892 kb on + strand at 4163.066 kb on + strand at 4163.203 kb on + strand, within Rru_A3623 at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.344 kb on + strand at 4163.345 kb on - strand at 4163.345 kb on - strand at 4163.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,162,472 + Rru_A3622 0.82 +1.0 4,162,472 + Rru_A3622 0.82 -1.1 4,162,472 + Rru_A3622 0.82 +0.6 4,162,566 - Rru_A3622 0.87 -4.5 4,162,803 - -1.2 4,162,803 - -3.5 4,162,877 + +0.1 4,162,877 + +0.9 4,162,878 - +0.3 4,162,886 - -0.1 4,162,892 + -0.2 4,163,066 + -1.1 4,163,203 + Rru_A3623 0.59 -0.1 4,163,344 + -0.5 4,163,344 + +2.4 4,163,344 + +0.8 4,163,344 + +0.5 4,163,344 + -1.1 4,163,344 + -1.1 4,163,344 + +3.2 4,163,345 - -1.2 4,163,345 - +1.2 4,163,345 - +0.5
Or see this region's nucleotide sequence