Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3617

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3616 and Rru_A3617 are separated by 125 nucleotidesRru_A3617 and Rru_A3618 are separated by 141 nucleotidesRru_A3618 and Rru_A3619 are separated by 382 nucleotides Rru_A3616: Rru_A3616 - Uroporphyrinogen decarboxylase HemE (NCBI), at 4,154,681 to 4,155,727 _A3616 Rru_A3617: Rru_A3617 - Ferrochelatase (NCBI), at 4,155,853 to 4,156,941 _A3617 Rru_A3618: Rru_A3618 - hypothetical protein (NCBI), at 4,157,083 to 4,157,529 _A3618 Rru_A3619: Rru_A3619 - transcription termination factor Rho (NCBI), at 4,157,912 to 4,159,168 _A3619 Position (kb) 4155 4156 4157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 4155.770 kb on + strandat 4155.770 kb on + strandat 4155.770 kb on + strandat 4155.770 kb on + strandat 4155.770 kb on + strandat 4155.772 kb on + strandat 4155.772 kb on + strandat 4155.772 kb on + strandat 4155.772 kb on + strandat 4157.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,155,770 + +0.7
4,155,770 + -3.1
4,155,770 + -3.8
4,155,770 + -2.4
4,155,770 + +2.3
4,155,772 + -1.8
4,155,772 + -1.2
4,155,772 + -1.9
4,155,772 + +2.7
4,157,062 + +7.1

Or see this region's nucleotide sequence