Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3613

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3611 and Rru_A3612 overlap by 8 nucleotidesRru_A3612 and Rru_A3613 are separated by 17 nucleotidesRru_A3613 and Rru_A3614 overlap by 4 nucleotidesRru_A3614 and Rru_A3615 overlap by 4 nucleotides Rru_A3611: Rru_A3611 - DNA polymerase III, epsilon subunit (NCBI), at 4,150,517 to 4,151,209 _A3611 Rru_A3612: Rru_A3612 - Dephospho-CoA kinase (NCBI), at 4,151,202 to 4,151,891 _A3612 Rru_A3613: Rru_A3613 - Quinate/Shikimate 5-dehydrogenase (NCBI), at 4,151,909 to 4,152,760 _A3613 Rru_A3614: Rru_A3614 - Maf-like protein (NCBI), at 4,152,757 to 4,153,365 _A3614 Rru_A3615: Rru_A3615 - Protein of unknown function DUF299 (NCBI), at 4,153,362 to 4,154,189 _A3615 Position (kb) 4151 4152 4153Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4151.219 kb on - strandat 4151.219 kb on - strandat 4151.910 kb on + strandat 4151.910 kb on + strandat 4152.811 kb on + strandat 4152.881 kb on + strand, within Rru_A3614at 4152.881 kb on + strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614at 4152.926 kb on + strand, within Rru_A3614at 4152.926 kb on + strand, within Rru_A3614at 4152.927 kb on - strand, within Rru_A3614at 4153.095 kb on + strand, within Rru_A3614at 4153.096 kb on - strand, within Rru_A3614at 4153.096 kb on - strand, within Rru_A3614at 4153.472 kb on - strand, within Rru_A3615at 4153.707 kb on - strand, within Rru_A3615

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,151,219 - -3.8
4,151,219 - +0.6
4,151,910 + +0.0
4,151,910 + +2.1
4,152,811 + -0.8
4,152,881 + Rru_A3614 0.20 -1.8
4,152,881 + Rru_A3614 0.20 -2.5
4,152,882 - Rru_A3614 0.21 -2.9
4,152,882 - Rru_A3614 0.21 +1.1
4,152,926 + Rru_A3614 0.28 -2.1
4,152,926 + Rru_A3614 0.28 -2.6
4,152,927 - Rru_A3614 0.28 -0.9
4,153,095 + Rru_A3614 0.56 -0.9
4,153,096 - Rru_A3614 0.56 +2.1
4,153,096 - Rru_A3614 0.56 +0.1
4,153,472 - Rru_A3615 0.13 -0.9
4,153,707 - Rru_A3615 0.42 -1.2

Or see this region's nucleotide sequence