Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3612

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3610 and Rru_A3611 are separated by 154 nucleotidesRru_A3611 and Rru_A3612 overlap by 8 nucleotidesRru_A3612 and Rru_A3613 are separated by 17 nucleotidesRru_A3613 and Rru_A3614 overlap by 4 nucleotides Rru_A3610: Rru_A3610 - protein export chaperone SecB (NCBI), at 4,149,880 to 4,150,362 _A3610 Rru_A3611: Rru_A3611 - DNA polymerase III, epsilon subunit (NCBI), at 4,150,517 to 4,151,209 _A3611 Rru_A3612: Rru_A3612 - Dephospho-CoA kinase (NCBI), at 4,151,202 to 4,151,891 _A3612 Rru_A3613: Rru_A3613 - Quinate/Shikimate 5-dehydrogenase (NCBI), at 4,151,909 to 4,152,760 _A3613 Rru_A3614: Rru_A3614 - Maf-like protein (NCBI), at 4,152,757 to 4,153,365 _A3614 Position (kb) 4151 4152Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4150.300 kb on + strand, within Rru_A3610at 4150.300 kb on + strand, within Rru_A3610at 4150.301 kb on - strand, within Rru_A3610at 4150.301 kb on - strand, within Rru_A3610at 4150.518 kb on + strandat 4150.518 kb on + strandat 4150.519 kb on - strandat 4150.519 kb on - strandat 4151.219 kb on - strandat 4151.219 kb on - strandat 4151.910 kb on + strandat 4151.910 kb on + strandat 4152.811 kb on + strandat 4152.881 kb on + strand, within Rru_A3614at 4152.881 kb on + strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614at 4152.882 kb on - strand, within Rru_A3614

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,150,300 + Rru_A3610 0.87 -2.4
4,150,300 + Rru_A3610 0.87 +1.8
4,150,301 - Rru_A3610 0.87 +0.8
4,150,301 - Rru_A3610 0.87 +0.4
4,150,518 + -1.1
4,150,518 + +1.1
4,150,519 - -1.8
4,150,519 - -3.8
4,151,219 - -3.8
4,151,219 - +0.6
4,151,910 + +0.0
4,151,910 + +2.1
4,152,811 + -0.8
4,152,881 + Rru_A3614 0.20 -1.8
4,152,881 + Rru_A3614 0.20 -2.5
4,152,882 - Rru_A3614 0.21 -2.9
4,152,882 - Rru_A3614 0.21 +1.1

Or see this region's nucleotide sequence