Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3583 and Rru_A3584 are separated by 17 nucleotides Rru_A3584 and Rru_A3585 overlap by 1 nucleotides Rru_A3585 and Rru_A3586 are separated by 153 nucleotides
Rru_A3583: Rru_A3583 - ATP-dependent protease-like (NCBI), at 4,125,543 to 4,127,525
_A3583
Rru_A3584: Rru_A3584 - CDP-diacylglycerol--serineO-phosphatidyltransferase (NCBI), at 4,127,543 to 4,128,370
_A3584
Rru_A3585: Rru_A3585 - Phosphatidylserine decarboxylase-related protein (NCBI), at 4,128,370 to 4,129,080
_A3585
Rru_A3586: Rru_A3586 - Peptidoglycan-binding LysM (NCBI), at 4,129,234 to 4,130,292
_A3586
Position (kb) 4127
4128
4129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4126.845 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.052 kb on + strand, within Rru_A3583 at 4127.053 kb on - strand, within Rru_A3583 at 4127.053 kb on - strand, within Rru_A3583 at 4127.095 kb on - strand, within Rru_A3583 at 4127.095 kb on - strand, within Rru_A3583 at 4127.344 kb on - strand at 4129.236 kb on - strand at 4129.299 kb on - strand at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.341 kb on - strand, within Rru_A3586 at 4129.350 kb on + strand, within Rru_A3586 at 4129.353 kb on - strand, within Rru_A3586 at 4129.353 kb on - strand, within Rru_A3586
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,126,845 + Rru_A3583 0.66 -1.1 4,127,052 + Rru_A3583 0.76 -3.0 4,127,052 + Rru_A3583 0.76 -1.4 4,127,052 + Rru_A3583 0.76 +2.1 4,127,053 - Rru_A3583 0.76 +0.3 4,127,053 - Rru_A3583 0.76 -2.6 4,127,095 - Rru_A3583 0.78 +0.5 4,127,095 - Rru_A3583 0.78 -1.8 4,127,344 - -3.3 4,129,236 - +0.8 4,129,299 - -0.9 4,129,341 - Rru_A3586 0.10 -0.9 4,129,341 - Rru_A3586 0.10 +3.2 4,129,341 - Rru_A3586 0.10 -0.5 4,129,341 - Rru_A3586 0.10 -1.2 4,129,341 - Rru_A3586 0.10 +2.1 4,129,341 - Rru_A3586 0.10 +1.5 4,129,341 - Rru_A3586 0.10 +0.1 4,129,350 + Rru_A3586 0.11 -1.7 4,129,353 - Rru_A3586 0.11 +1.1 4,129,353 - Rru_A3586 0.11 +0.1
Or see this region's nucleotide sequence