Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3560 and Rru_A3561 are separated by 139 nucleotides Rru_A3561 and Rru_A3562 are separated by 274 nucleotides
Rru_A3560: Rru_A3560 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI), at 4,099,471 to 4,102,326
_A3560
Rru_A3561: Rru_A3561 - ABC transporter, transmembrane region (NCBI), at 4,102,466 to 4,104,205
_A3561
Rru_A3562: Rru_A3562 - hypothetical protein (NCBI), at 4,104,480 to 4,105,529
_A3562
Position (kb) 4102
4103
4104
4105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4101.734 kb on + strand, within Rru_A3560 at 4101.734 kb on + strand, within Rru_A3560 at 4101.735 kb on - strand, within Rru_A3560 at 4101.845 kb on + strand, within Rru_A3560 at 4102.287 kb on + strand at 4102.287 kb on + strand at 4102.288 kb on - strand at 4102.288 kb on - strand at 4102.391 kb on + strand at 4102.391 kb on + strand at 4102.391 kb on + strand at 4102.391 kb on + strand at 4102.391 kb on + strand at 4102.392 kb on - strand at 4102.392 kb on - strand at 4102.435 kb on - strand at 4102.435 kb on - strand at 4102.440 kb on - strand at 4102.467 kb on + strand at 4102.467 kb on + strand at 4102.468 kb on - strand at 4104.322 kb on - strand at 4104.423 kb on - strand at 4104.433 kb on + strand at 4104.433 kb on + strand at 4104.433 kb on + strand at 4104.434 kb on - strand at 4104.470 kb on + strand at 4104.470 kb on + strand at 4104.470 kb on + strand at 4104.525 kb on - strand at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.762 kb on + strand, within Rru_A3562 at 4104.763 kb on - strand, within Rru_A3562 at 4104.763 kb on - strand, within Rru_A3562 at 4104.763 kb on - strand, within Rru_A3562 at 4104.763 kb on - strand, within Rru_A3562 at 4104.763 kb on - strand, within Rru_A3562 at 4104.868 kb on - strand, within Rru_A3562 at 4104.868 kb on - strand, within Rru_A3562 at 4104.868 kb on - strand, within Rru_A3562 at 4104.868 kb on - strand, within Rru_A3562 at 4104.868 kb on - strand, within Rru_A3562 at 4104.869 kb on + strand, within Rru_A3562 at 4105.057 kb on - strand, within Rru_A3562 at 4105.083 kb on + strand, within Rru_A3562 at 4105.086 kb on + strand, within Rru_A3562 at 4105.144 kb on - strand, within Rru_A3562 at 4105.161 kb on + strand, within Rru_A3562 at 4105.161 kb on + strand, within Rru_A3562 at 4105.161 kb on + strand, within Rru_A3562 at 4105.162 kb on - strand, within Rru_A3562
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,101,734 + Rru_A3560 0.79 -0.9 4,101,734 + Rru_A3560 0.79 -2.2 4,101,735 - Rru_A3560 0.79 -0.5 4,101,845 + Rru_A3560 0.83 -4.1 4,102,287 + -0.9 4,102,287 + +1.2 4,102,288 - -0.4 4,102,288 - -2.7 4,102,391 + +0.5 4,102,391 + +0.8 4,102,391 + +0.7 4,102,391 + +0.8 4,102,391 + +2.6 4,102,392 - -1.4 4,102,392 - +5.4 4,102,435 - +1.2 4,102,435 - +0.7 4,102,440 - -0.2 4,102,467 + -0.2 4,102,467 + -0.0 4,102,468 - +0.0 4,104,322 - +1.1 4,104,423 - +1.2 4,104,433 + +0.4 4,104,433 + +2.8 4,104,433 + -2.0 4,104,434 - +1.1 4,104,470 + -1.4 4,104,470 + -0.7 4,104,470 + +1.3 4,104,525 - -0.5 4,104,762 + Rru_A3562 0.27 +0.5 4,104,762 + Rru_A3562 0.27 +0.7 4,104,762 + Rru_A3562 0.27 +0.8 4,104,762 + Rru_A3562 0.27 -0.9 4,104,762 + Rru_A3562 0.27 -1.6 4,104,762 + Rru_A3562 0.27 -1.4 4,104,762 + Rru_A3562 0.27 -0.2 4,104,763 - Rru_A3562 0.27 -0.6 4,104,763 - Rru_A3562 0.27 -1.2 4,104,763 - Rru_A3562 0.27 +0.4 4,104,763 - Rru_A3562 0.27 -2.4 4,104,763 - Rru_A3562 0.27 -0.3 4,104,868 - Rru_A3562 0.37 +0.8 4,104,868 - Rru_A3562 0.37 -0.2 4,104,868 - Rru_A3562 0.37 -1.9 4,104,868 - Rru_A3562 0.37 +4.0 4,104,868 - Rru_A3562 0.37 -0.2 4,104,869 + Rru_A3562 0.37 -3.3 4,105,057 - Rru_A3562 0.55 +0.4 4,105,083 + Rru_A3562 0.57 -0.9 4,105,086 + Rru_A3562 0.58 +0.8 4,105,144 - Rru_A3562 0.63 -0.2 4,105,161 + Rru_A3562 0.65 -2.4 4,105,161 + Rru_A3562 0.65 +0.5 4,105,161 + Rru_A3562 0.65 +0.7 4,105,162 - Rru_A3562 0.65 -1.6
Or see this region's nucleotide sequence