Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3523 and Rru_A3524 overlap by 4 nucleotides Rru_A3524 and Rru_A3525 are separated by 109 nucleotides Rru_A3525 and Rru_A3526 are separated by 7 nucleotides
Rru_A3523: Rru_A3523 - Phenylalanyl-tRNA synthetase, alpha subunit (NCBI), at 4,054,235 to 4,055,311
_A3523
Rru_A3524: Rru_A3524 - phenylalanyl-tRNA synthetase, beta subunit (NCBI), at 4,055,308 to 4,057,710
_A3524
Rru_A3525: Rru_A3525 - hypothetical protein (NCBI), at 4,057,820 to 4,058,458
_A3525
Rru_A3526: Rru_A3526 - Protein of unknown function DUF167 (NCBI), at 4,058,466 to 4,058,807
_A3526
Position (kb)
4055
4056
4057
4058 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4057.709 kb on - strand at 4057.709 kb on - strand at 4057.743 kb on + strand at 4057.744 kb on - strand at 4057.744 kb on - strand at 4057.762 kb on + strand at 4057.762 kb on + strand at 4057.762 kb on + strand at 4057.762 kb on + strand at 4057.762 kb on + strand at 4057.762 kb on + strand at 4057.763 kb on - strand at 4057.763 kb on - strand at 4057.763 kb on - strand at 4057.854 kb on + strand at 4057.855 kb on - strand at 4057.855 kb on - strand at 4057.855 kb on - strand at 4057.909 kb on + strand, within Rru_A3525 at 4057.910 kb on - strand, within Rru_A3525 at 4058.122 kb on + strand, within Rru_A3525 at 4058.130 kb on + strand, within Rru_A3525 at 4058.130 kb on + strand, within Rru_A3525 at 4058.130 kb on + strand, within Rru_A3525 at 4058.467 kb on + strand at 4058.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,057,709 - +0.9 4,057,709 - -1.5 4,057,743 + +1.4 4,057,744 - +1.6 4,057,744 - -0.7 4,057,762 + +0.6 4,057,762 + +1.1 4,057,762 + -1.4 4,057,762 + +0.2 4,057,762 + +0.3 4,057,762 + +2.9 4,057,763 - +0.5 4,057,763 - -2.0 4,057,763 - -1.7 4,057,854 + +1.1 4,057,855 - -1.0 4,057,855 - +1.1 4,057,855 - -0.2 4,057,909 + Rru_A3525 0.14 +0.5 4,057,910 - Rru_A3525 0.14 -0.3 4,058,122 + Rru_A3525 0.47 +0.4 4,058,130 + Rru_A3525 0.49 -2.7 4,058,130 + Rru_A3525 0.49 -4.1 4,058,130 + Rru_A3525 0.49 +0.2 4,058,467 + +0.7 4,058,467 + -1.1
Or see this region's nucleotide sequence