Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3524

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3523 and Rru_A3524 overlap by 4 nucleotidesRru_A3524 and Rru_A3525 are separated by 109 nucleotidesRru_A3525 and Rru_A3526 are separated by 7 nucleotides Rru_A3523: Rru_A3523 - Phenylalanyl-tRNA synthetase, alpha subunit (NCBI), at 4,054,235 to 4,055,311 _A3523 Rru_A3524: Rru_A3524 - phenylalanyl-tRNA synthetase, beta subunit (NCBI), at 4,055,308 to 4,057,710 _A3524 Rru_A3525: Rru_A3525 - hypothetical protein (NCBI), at 4,057,820 to 4,058,458 _A3525 Rru_A3526: Rru_A3526 - Protein of unknown function DUF167 (NCBI), at 4,058,466 to 4,058,807 _A3526 Position (kb) 4055 4056 4057 4058Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4057.709 kb on - strandat 4057.709 kb on - strandat 4057.743 kb on + strandat 4057.744 kb on - strandat 4057.744 kb on - strandat 4057.762 kb on + strandat 4057.762 kb on + strandat 4057.762 kb on + strandat 4057.762 kb on + strandat 4057.762 kb on + strandat 4057.762 kb on + strandat 4057.763 kb on - strandat 4057.763 kb on - strandat 4057.763 kb on - strandat 4057.854 kb on + strandat 4057.855 kb on - strandat 4057.855 kb on - strandat 4057.855 kb on - strandat 4057.909 kb on + strand, within Rru_A3525at 4057.910 kb on - strand, within Rru_A3525at 4058.122 kb on + strand, within Rru_A3525at 4058.130 kb on + strand, within Rru_A3525at 4058.130 kb on + strand, within Rru_A3525at 4058.130 kb on + strand, within Rru_A3525at 4058.467 kb on + strandat 4058.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,057,709 - +0.9
4,057,709 - -1.5
4,057,743 + +1.4
4,057,744 - +1.6
4,057,744 - -0.7
4,057,762 + +0.6
4,057,762 + +1.1
4,057,762 + -1.4
4,057,762 + +0.2
4,057,762 + +0.3
4,057,762 + +2.9
4,057,763 - +0.5
4,057,763 - -2.0
4,057,763 - -1.7
4,057,854 + +1.1
4,057,855 - -1.0
4,057,855 - +1.1
4,057,855 - -0.2
4,057,909 + Rru_A3525 0.14 +0.5
4,057,910 - Rru_A3525 0.14 -0.3
4,058,122 + Rru_A3525 0.47 +0.4
4,058,130 + Rru_A3525 0.49 -2.7
4,058,130 + Rru_A3525 0.49 -4.1
4,058,130 + Rru_A3525 0.49 +0.2
4,058,467 + +0.7
4,058,467 + -1.1

Or see this region's nucleotide sequence