Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3523

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3520 and Rru_A3521 are separated by 73 nucleotidesRru_A3521 and Rru_A3522 are separated by 54 nucleotidesRru_A3522 and Rru_A3523 are separated by 164 nucleotidesRru_A3523 and Rru_A3524 overlap by 4 nucleotides Rru_A3520: Rru_A3520 - Protein of unknown function UPF0118 (NCBI), at 4,052,063 to 4,053,367 _A3520 Rru_A3521: Rru_A3521 - Ribosomal protein L35 (NCBI), at 4,053,441 to 4,053,638 _A3521 Rru_A3522: Rru_A3522 - Ribosomal protein L20 (NCBI), at 4,053,693 to 4,054,070 _A3522 Rru_A3523: Rru_A3523 - Phenylalanyl-tRNA synthetase, alpha subunit (NCBI), at 4,054,235 to 4,055,311 _A3523 Rru_A3524: Rru_A3524 - phenylalanyl-tRNA synthetase, beta subunit (NCBI), at 4,055,308 to 4,057,710 _A3524 Position (kb) 4054 4055 4056Strain fitness (log2 ratio) -3 -2 -1 0 1at 4053.305 kb on + strandat 4053.305 kb on + strandat 4053.305 kb on + strandat 4053.305 kb on + strandat 4053.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,053,305 + +0.5
4,053,305 + -3.4
4,053,305 + +0.4
4,053,305 + +1.1
4,053,305 + -1.8

Or see this region's nucleotide sequence