Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3496 and Rru_A3497 are separated by 260 nucleotides Rru_A3497 and Rru_A3498 are separated by 34 nucleotides Rru_A3498 and Rru_A3499 are separated by 18 nucleotides
Rru_A3496: Rru_A3496 - chemotaxis sensory transducer (NCBI), at 4,024,109 to 4,026,214
_A3496
Rru_A3497: Rru_A3497 - Disulphide bond formation protein DsbB (NCBI), at 4,026,475 to 4,027,008
_A3497
Rru_A3498: Rru_A3498 - Ubiquinone biosynthesis protein COQ7 (NCBI), at 4,027,043 to 4,027,681
_A3498
Rru_A3499: Rru_A3499 - hypothetical protein (NCBI), at 4,027,700 to 4,028,227
_A3499
Position (kb)
4026
4027
4028 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4025.759 kb on - strand, within Rru_A3496 at 4025.874 kb on + strand, within Rru_A3496 at 4025.874 kb on + strand, within Rru_A3496 at 4026.189 kb on + strand at 4026.190 kb on - strand at 4026.261 kb on + strand at 4026.291 kb on - strand at 4026.310 kb on + strand at 4026.311 kb on - strand at 4026.437 kb on + strand at 4026.437 kb on + strand at 4026.437 kb on + strand at 4026.437 kb on + strand at 4026.438 kb on - strand at 4026.438 kb on - strand at 4027.005 kb on - strand at 4027.006 kb on + strand at 4027.006 kb on + strand at 4027.007 kb on - strand at 4027.007 kb on - strand at 4027.007 kb on - strand at 4027.007 kb on - strand at 4027.007 kb on - strand at 4027.007 kb on - strand at 4027.701 kb on + strand at 4027.756 kb on + strand, within Rru_A3499 at 4027.756 kb on + strand, within Rru_A3499 at 4027.757 kb on - strand, within Rru_A3499 at 4027.757 kb on - strand, within Rru_A3499 at 4027.759 kb on - strand, within Rru_A3499
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,025,759 - Rru_A3496 0.78 -1.5 4,025,874 + Rru_A3496 0.84 -0.2 4,025,874 + Rru_A3496 0.84 -1.3 4,026,189 + +0.2 4,026,190 - -0.5 4,026,261 + -0.9 4,026,291 - -1.9 4,026,310 + -1.8 4,026,311 - +1.6 4,026,437 + +0.8 4,026,437 + -0.8 4,026,437 + +1.5 4,026,437 + -0.1 4,026,438 - -0.7 4,026,438 - -1.8 4,027,005 - +1.4 4,027,006 + +1.8 4,027,006 + +0.7 4,027,007 - +2.3 4,027,007 - +2.2 4,027,007 - +1.4 4,027,007 - +0.5 4,027,007 - +2.7 4,027,007 - +0.5 4,027,701 + +0.7 4,027,756 + Rru_A3499 0.11 +0.9 4,027,756 + Rru_A3499 0.11 +3.2 4,027,757 - Rru_A3499 0.11 +3.1 4,027,757 - Rru_A3499 0.11 +1.1 4,027,759 - Rru_A3499 0.11 -1.9
Or see this region's nucleotide sequence