Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3497

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3496 and Rru_A3497 are separated by 260 nucleotidesRru_A3497 and Rru_A3498 are separated by 34 nucleotidesRru_A3498 and Rru_A3499 are separated by 18 nucleotides Rru_A3496: Rru_A3496 - chemotaxis sensory transducer (NCBI), at 4,024,109 to 4,026,214 _A3496 Rru_A3497: Rru_A3497 - Disulphide bond formation protein DsbB (NCBI), at 4,026,475 to 4,027,008 _A3497 Rru_A3498: Rru_A3498 - Ubiquinone biosynthesis protein COQ7 (NCBI), at 4,027,043 to 4,027,681 _A3498 Rru_A3499: Rru_A3499 - hypothetical protein (NCBI), at 4,027,700 to 4,028,227 _A3499 Position (kb) 4026 4027 4028Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4025.759 kb on - strand, within Rru_A3496at 4025.874 kb on + strand, within Rru_A3496at 4025.874 kb on + strand, within Rru_A3496at 4026.189 kb on + strandat 4026.190 kb on - strandat 4026.261 kb on + strandat 4026.291 kb on - strandat 4026.310 kb on + strandat 4026.311 kb on - strandat 4026.437 kb on + strandat 4026.437 kb on + strandat 4026.437 kb on + strandat 4026.437 kb on + strandat 4026.438 kb on - strandat 4026.438 kb on - strandat 4027.005 kb on - strandat 4027.006 kb on + strandat 4027.006 kb on + strandat 4027.007 kb on - strandat 4027.007 kb on - strandat 4027.007 kb on - strandat 4027.007 kb on - strandat 4027.007 kb on - strandat 4027.007 kb on - strandat 4027.701 kb on + strandat 4027.756 kb on + strand, within Rru_A3499at 4027.756 kb on + strand, within Rru_A3499at 4027.757 kb on - strand, within Rru_A3499at 4027.757 kb on - strand, within Rru_A3499at 4027.759 kb on - strand, within Rru_A3499

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,025,759 - Rru_A3496 0.78 -1.5
4,025,874 + Rru_A3496 0.84 -0.2
4,025,874 + Rru_A3496 0.84 -1.3
4,026,189 + +0.2
4,026,190 - -0.5
4,026,261 + -0.9
4,026,291 - -1.9
4,026,310 + -1.8
4,026,311 - +1.6
4,026,437 + +0.8
4,026,437 + -0.8
4,026,437 + +1.5
4,026,437 + -0.1
4,026,438 - -0.7
4,026,438 - -1.8
4,027,005 - +1.4
4,027,006 + +1.8
4,027,006 + +0.7
4,027,007 - +2.3
4,027,007 - +2.2
4,027,007 - +1.4
4,027,007 - +0.5
4,027,007 - +2.7
4,027,007 - +0.5
4,027,701 + +0.7
4,027,756 + Rru_A3499 0.11 +0.9
4,027,756 + Rru_A3499 0.11 +3.2
4,027,757 - Rru_A3499 0.11 +3.1
4,027,757 - Rru_A3499 0.11 +1.1
4,027,759 - Rru_A3499 0.11 -1.9

Or see this region's nucleotide sequence