Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3488

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3487 and Rru_A3488 are separated by 144 nucleotidesRru_A3488 and Rru_A3489 are separated by 128 nucleotides Rru_A3487: Rru_A3487 - Threonyl-tRNA synthetase, class IIa (NCBI), at 4,012,361 to 4,014,292 _A3487 Rru_A3488: Rru_A3488 - Initiation factor 3 (NCBI), at 4,014,437 to 4,014,958 _A3488 Rru_A3489: Rru_A3489 - hypothetical protein (NCBI), at 4,015,087 to 4,016,529 _A3489 Position (kb) 4014 4015Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4015.157 kb on + strandat 4015.158 kb on - strandat 4015.180 kb on - strandat 4015.214 kb on + strandat 4015.268 kb on + strand, within Rru_A3489at 4015.268 kb on + strand, within Rru_A3489at 4015.268 kb on + strand, within Rru_A3489at 4015.269 kb on - strand, within Rru_A3489at 4015.728 kb on - strand, within Rru_A3489at 4015.728 kb on - strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.737 kb on - strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.782 kb on - strand, within Rru_A3489

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
4,015,157 + -0.8
4,015,158 - +0.7
4,015,180 - +1.0
4,015,214 + +1.4
4,015,268 + Rru_A3489 0.13 -1.8
4,015,268 + Rru_A3489 0.13 -3.3
4,015,268 + Rru_A3489 0.13 +1.8
4,015,269 - Rru_A3489 0.13 -0.5
4,015,728 - Rru_A3489 0.44 -0.7
4,015,728 - Rru_A3489 0.44 -0.0
4,015,736 + Rru_A3489 0.45 +2.1
4,015,736 + Rru_A3489 0.45 -0.5
4,015,736 + Rru_A3489 0.45 +0.1
4,015,737 - Rru_A3489 0.45 +0.5
4,015,766 + Rru_A3489 0.47 -1.3
4,015,766 + Rru_A3489 0.47 +3.1
4,015,766 + Rru_A3489 0.47 -3.3
4,015,766 + Rru_A3489 0.47 -1.8
4,015,782 - Rru_A3489 0.48 +2.2

Or see this region's nucleotide sequence