Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3480

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3479 and Rru_A3480 are separated by 27 nucleotidesRru_A3480 and Rru_A3481 overlap by 7 nucleotidesRru_A3481 and Rru_A3482 are separated by 157 nucleotides Rru_A3479: Rru_A3479 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI), at 4,004,094 to 4,004,945 _A3479 Rru_A3480: Rru_A3480 - succinyl-diaminopimelate desuccinylase (NCBI), at 4,004,973 to 4,006,187 _A3480 Rru_A3481: Rru_A3481 - hypothetical protein (NCBI), at 4,006,181 to 4,006,780 _A3481 Rru_A3482: Rru_A3482 - Transcriptional Regulator, MarR family (NCBI), at 4,006,938 to 4,007,453 _A3482 Position (kb) 4004 4005 4006 4007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4006.310 kb on + strand, within Rru_A3481at 4006.311 kb on - strand, within Rru_A3481at 4006.311 kb on - strand, within Rru_A3481at 4006.311 kb on - strand, within Rru_A3481at 4006.311 kb on - strand, within Rru_A3481at 4006.421 kb on + strand, within Rru_A3481at 4006.421 kb on + strand, within Rru_A3481at 4006.422 kb on - strand, within Rru_A3481at 4006.422 kb on - strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.496 kb on + strand, within Rru_A3481at 4006.497 kb on - strand, within Rru_A3481at 4006.497 kb on - strand, within Rru_A3481at 4006.497 kb on - strand, within Rru_A3481at 4006.515 kb on - strand, within Rru_A3481at 4006.515 kb on - strand, within Rru_A3481at 4006.515 kb on - strand, within Rru_A3481at 4006.517 kb on - strand, within Rru_A3481at 4006.517 kb on - strand, within Rru_A3481at 4006.637 kb on + strand, within Rru_A3481at 4006.637 kb on + strand, within Rru_A3481at 4006.637 kb on + strand, within Rru_A3481at 4006.638 kb on - strand, within Rru_A3481at 4006.822 kb on - strandat 4006.897 kb on + strandat 4006.899 kb on + strandat 4006.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,006,310 + Rru_A3481 0.21 -0.1
4,006,311 - Rru_A3481 0.22 -0.6
4,006,311 - Rru_A3481 0.22 -0.7
4,006,311 - Rru_A3481 0.22 -0.4
4,006,311 - Rru_A3481 0.22 +2.9
4,006,421 + Rru_A3481 0.40 -2.9
4,006,421 + Rru_A3481 0.40 -2.5
4,006,422 - Rru_A3481 0.40 -0.3
4,006,422 - Rru_A3481 0.40 +0.5
4,006,496 + Rru_A3481 0.53 -0.1
4,006,496 + Rru_A3481 0.53 +2.1
4,006,496 + Rru_A3481 0.53 -2.1
4,006,496 + Rru_A3481 0.53 -0.6
4,006,496 + Rru_A3481 0.53 -3.8
4,006,496 + Rru_A3481 0.53 -0.1
4,006,496 + Rru_A3481 0.53 +3.1
4,006,497 - Rru_A3481 0.53 -0.3
4,006,497 - Rru_A3481 0.53 -0.3
4,006,497 - Rru_A3481 0.53 +0.3
4,006,515 - Rru_A3481 0.56 +1.1
4,006,515 - Rru_A3481 0.56 +2.1
4,006,515 - Rru_A3481 0.56 -2.9
4,006,517 - Rru_A3481 0.56 +1.1
4,006,517 - Rru_A3481 0.56 -1.7
4,006,637 + Rru_A3481 0.76 -4.3
4,006,637 + Rru_A3481 0.76 -0.3
4,006,637 + Rru_A3481 0.76 -0.9
4,006,638 - Rru_A3481 0.76 -1.1
4,006,822 - -0.5
4,006,897 + +1.4
4,006,899 + +0.5
4,006,903 + -1.5

Or see this region's nucleotide sequence