Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3479 and Rru_A3480 are separated by 27 nucleotides Rru_A3480 and Rru_A3481 overlap by 7 nucleotides Rru_A3481 and Rru_A3482 are separated by 157 nucleotides
Rru_A3479: Rru_A3479 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NCBI), at 4,004,094 to 4,004,945
_A3479
Rru_A3480: Rru_A3480 - succinyl-diaminopimelate desuccinylase (NCBI), at 4,004,973 to 4,006,187
_A3480
Rru_A3481: Rru_A3481 - hypothetical protein (NCBI), at 4,006,181 to 4,006,780
_A3481
Rru_A3482: Rru_A3482 - Transcriptional Regulator, MarR family (NCBI), at 4,006,938 to 4,007,453
_A3482
Position (kb)
4004
4005
4006
4007 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4006.310 kb on + strand, within Rru_A3481 at 4006.311 kb on - strand, within Rru_A3481 at 4006.311 kb on - strand, within Rru_A3481 at 4006.311 kb on - strand, within Rru_A3481 at 4006.311 kb on - strand, within Rru_A3481 at 4006.421 kb on + strand, within Rru_A3481 at 4006.421 kb on + strand, within Rru_A3481 at 4006.422 kb on - strand, within Rru_A3481 at 4006.422 kb on - strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.496 kb on + strand, within Rru_A3481 at 4006.497 kb on - strand, within Rru_A3481 at 4006.497 kb on - strand, within Rru_A3481 at 4006.497 kb on - strand, within Rru_A3481 at 4006.515 kb on - strand, within Rru_A3481 at 4006.515 kb on - strand, within Rru_A3481 at 4006.515 kb on - strand, within Rru_A3481 at 4006.517 kb on - strand, within Rru_A3481 at 4006.517 kb on - strand, within Rru_A3481 at 4006.637 kb on + strand, within Rru_A3481 at 4006.637 kb on + strand, within Rru_A3481 at 4006.637 kb on + strand, within Rru_A3481 at 4006.638 kb on - strand, within Rru_A3481 at 4006.822 kb on - strand at 4006.897 kb on + strand at 4006.899 kb on + strand at 4006.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 4,006,310 + Rru_A3481 0.21 -0.1 4,006,311 - Rru_A3481 0.22 -0.6 4,006,311 - Rru_A3481 0.22 -0.7 4,006,311 - Rru_A3481 0.22 -0.4 4,006,311 - Rru_A3481 0.22 +2.9 4,006,421 + Rru_A3481 0.40 -2.9 4,006,421 + Rru_A3481 0.40 -2.5 4,006,422 - Rru_A3481 0.40 -0.3 4,006,422 - Rru_A3481 0.40 +0.5 4,006,496 + Rru_A3481 0.53 -0.1 4,006,496 + Rru_A3481 0.53 +2.1 4,006,496 + Rru_A3481 0.53 -2.1 4,006,496 + Rru_A3481 0.53 -0.6 4,006,496 + Rru_A3481 0.53 -3.8 4,006,496 + Rru_A3481 0.53 -0.1 4,006,496 + Rru_A3481 0.53 +3.1 4,006,497 - Rru_A3481 0.53 -0.3 4,006,497 - Rru_A3481 0.53 -0.3 4,006,497 - Rru_A3481 0.53 +0.3 4,006,515 - Rru_A3481 0.56 +1.1 4,006,515 - Rru_A3481 0.56 +2.1 4,006,515 - Rru_A3481 0.56 -2.9 4,006,517 - Rru_A3481 0.56 +1.1 4,006,517 - Rru_A3481 0.56 -1.7 4,006,637 + Rru_A3481 0.76 -4.3 4,006,637 + Rru_A3481 0.76 -0.3 4,006,637 + Rru_A3481 0.76 -0.9 4,006,638 - Rru_A3481 0.76 -1.1 4,006,822 - -0.5 4,006,897 + +1.4 4,006,899 + +0.5 4,006,903 + -1.5
Or see this region's nucleotide sequence