Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3422

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3421 and Rru_A3422 are separated by 138 nucleotidesRru_A3422 and Rru_A3423 are separated by 24 nucleotides Rru_A3421: Rru_A3421 - Protein of unknown function DUF461 (NCBI), at 3,938,560 to 3,939,135 _A3421 Rru_A3422: Rru_A3422 - Two component Transcriptional regulator, Winged helix family (NCBI), at 3,939,274 to 3,939,999 _A3422 Rru_A3423: Rru_A3423 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,940,024 to 3,941,718 _A3423 Position (kb) 3939 3940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3938.535 kb on + strandat 3938.536 kb on - strandat 3938.551 kb on + strandat 3939.138 kb on + strandat 3939.138 kb on + strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.156 kb on + strandat 3939.157 kb on - strandat 3939.217 kb on + strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.257 kb on + strandat 3939.257 kb on + strandat 3939.258 kb on - strandat 3939.258 kb on - strandat 3939.258 kb on - strandat 3939.998 kb on - strandat 3939.998 kb on - strandat 3940.520 kb on - strand, within Rru_A3423at 3940.705 kb on + strand, within Rru_A3423

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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3,938,535 + +2.1
3,938,536 - +6.7
3,938,551 + -1.0
3,939,138 + -1.6
3,939,138 + -1.9
3,939,139 - +4.7
3,939,139 - -2.1
3,939,139 - +1.1
3,939,139 - +0.7
3,939,139 - +3.1
3,939,139 - +3.6
3,939,139 - +1.9
3,939,156 + -1.1
3,939,157 - -2.8
3,939,217 + -0.9
3,939,218 - +2.0
3,939,218 - -0.3
3,939,218 - +2.2
3,939,218 - -0.9
3,939,218 - +0.5
3,939,218 - +1.5
3,939,257 + -2.3
3,939,257 + -2.2
3,939,258 - +1.5
3,939,258 - +0.3
3,939,258 - -0.3
3,939,998 - -3.2
3,939,998 - +1.8
3,940,520 - Rru_A3423 0.29 -0.5
3,940,705 + Rru_A3423 0.40 +2.1

Or see this region's nucleotide sequence