Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3421 and Rru_A3422 are separated by 138 nucleotides Rru_A3422 and Rru_A3423 are separated by 24 nucleotides
Rru_A3421: Rru_A3421 - Protein of unknown function DUF461 (NCBI), at 3,938,560 to 3,939,135
_A3421
Rru_A3422: Rru_A3422 - Two component Transcriptional regulator, Winged helix family (NCBI), at 3,939,274 to 3,939,999
_A3422
Rru_A3423: Rru_A3423 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,940,024 to 3,941,718
_A3423
Position (kb)
3939
3940 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3938.535 kb on + strand at 3938.536 kb on - strand at 3938.551 kb on + strand at 3939.138 kb on + strand at 3939.138 kb on + strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.139 kb on - strand at 3939.156 kb on + strand at 3939.157 kb on - strand at 3939.217 kb on + strand at 3939.218 kb on - strand at 3939.218 kb on - strand at 3939.218 kb on - strand at 3939.218 kb on - strand at 3939.218 kb on - strand at 3939.218 kb on - strand at 3939.257 kb on + strand at 3939.257 kb on + strand at 3939.258 kb on - strand at 3939.258 kb on - strand at 3939.258 kb on - strand at 3939.998 kb on - strand at 3939.998 kb on - strand at 3940.520 kb on - strand, within Rru_A3423 at 3940.705 kb on + strand, within Rru_A3423
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 3,938,535 + +2.1 3,938,536 - +6.7 3,938,551 + -1.0 3,939,138 + -1.6 3,939,138 + -1.9 3,939,139 - +4.7 3,939,139 - -2.1 3,939,139 - +1.1 3,939,139 - +0.7 3,939,139 - +3.1 3,939,139 - +3.6 3,939,139 - +1.9 3,939,156 + -1.1 3,939,157 - -2.8 3,939,217 + -0.9 3,939,218 - +2.0 3,939,218 - -0.3 3,939,218 - +2.2 3,939,218 - -0.9 3,939,218 - +0.5 3,939,218 - +1.5 3,939,257 + -2.3 3,939,257 + -2.2 3,939,258 - +1.5 3,939,258 - +0.3 3,939,258 - -0.3 3,939,998 - -3.2 3,939,998 - +1.8 3,940,520 - Rru_A3423 0.29 -0.5 3,940,705 + Rru_A3423 0.40 +2.1
Or see this region's nucleotide sequence