Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3421

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3420 and Rru_A3421 are separated by 697 nucleotidesRru_A3421 and Rru_A3422 are separated by 138 nucleotidesRru_A3422 and Rru_A3423 are separated by 24 nucleotides Rru_A3420: Rru_A3420 - Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI), at 3,937,050 to 3,937,862 _A3420 Rru_A3421: Rru_A3421 - Protein of unknown function DUF461 (NCBI), at 3,938,560 to 3,939,135 _A3421 Rru_A3422: Rru_A3422 - Two component Transcriptional regulator, Winged helix family (NCBI), at 3,939,274 to 3,939,999 _A3422 Rru_A3423: Rru_A3423 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,940,024 to 3,941,718 _A3423 Position (kb) 3938 3939 3940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3937.745 kb on - strand, within Rru_A3420at 3937.745 kb on - strand, within Rru_A3420at 3937.745 kb on - strand, within Rru_A3420at 3937.862 kb on + strandat 3937.863 kb on - strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.875 kb on + strandat 3937.876 kb on - strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.877 kb on + strandat 3937.878 kb on - strandat 3937.878 kb on - strandat 3937.878 kb on - strandat 3937.878 kb on - strandat 3938.005 kb on + strandat 3938.174 kb on + strandat 3938.174 kb on + strandat 3938.175 kb on - strandat 3938.535 kb on + strandat 3938.536 kb on - strandat 3938.551 kb on + strandat 3939.138 kb on + strandat 3939.138 kb on + strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.139 kb on - strandat 3939.156 kb on + strandat 3939.157 kb on - strandat 3939.217 kb on + strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.218 kb on - strandat 3939.257 kb on + strandat 3939.257 kb on + strandat 3939.258 kb on - strandat 3939.258 kb on - strandat 3939.258 kb on - strandat 3939.998 kb on - strandat 3939.998 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
3,937,745 - Rru_A3420 0.85 +7.9
3,937,745 - Rru_A3420 0.85 -0.8
3,937,745 - Rru_A3420 0.85 -0.0
3,937,862 + -2.2
3,937,863 - +0.1
3,937,875 + +0.2
3,937,875 + -1.6
3,937,875 + -0.3
3,937,875 + -1.1
3,937,876 - -0.3
3,937,877 + +1.1
3,937,877 + -1.4
3,937,877 + -3.1
3,937,877 + -3.7
3,937,878 - +6.8
3,937,878 - +7.3
3,937,878 - +0.4
3,937,878 - +6.8
3,938,005 + +0.4
3,938,174 + -1.8
3,938,174 + +0.8
3,938,175 - +6.4
3,938,535 + +2.1
3,938,536 - +6.7
3,938,551 + -1.0
3,939,138 + -1.6
3,939,138 + -1.9
3,939,139 - +4.7
3,939,139 - -2.1
3,939,139 - +1.1
3,939,139 - +0.7
3,939,139 - +3.1
3,939,139 - +3.6
3,939,139 - +1.9
3,939,156 + -1.1
3,939,157 - -2.8
3,939,217 + -0.9
3,939,218 - +2.0
3,939,218 - -0.3
3,939,218 - +2.2
3,939,218 - -0.9
3,939,218 - +0.5
3,939,218 - +1.5
3,939,257 + -2.3
3,939,257 + -2.2
3,939,258 - +1.5
3,939,258 - +0.3
3,939,258 - -0.3
3,939,998 - -3.2
3,939,998 - +1.8

Or see this region's nucleotide sequence